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AT1G12410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23549413 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16207701 (2006): plastid
  • PMID:12938931 (2003): plastid
  • PMID:11278690 (2001): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CLP protease proteolytic subunit 2
Curator
Summary (TAIR10)
Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
Computational
Description (TAIR10)
CLP protease proteolytic subunit 2 (CLP2); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: plastid-encoded CLP P (TAIR:ATCG00670.1); Has 13082 Blast hits to 13064 proteins in 2999 species: Archae - 2; Bacteria - 8275; Metazoa - 145; Fungi - 81; Plants - 1076; Viruses - 67; Other Eukaryotes - 3436 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G12410-MONOMERBioGrid:23037eggNOG:COG0740eggNOG:KOG0840EMBL:AB022327EMBL:AC025416EMBL:AY057617
EMBL:AY062770EMBL:AY081641EMBL:CP002684EnsemblPlants:AT1G12410EnsemblPlants:AT1G12410.1entrez:837797Gene3D:3.90.226.10
GeneID:837797Genevisible:Q9XJ36GO:GO:0004252GO:GO:0009507GO:GO:0009534GO:GO:0009570GO:GO:0009658
GO:GO:0009840GO:GO:0009941GO:GO:0010287Gramene:AT1G12410.1HAMAP:MF_00444hmmpanther:PTHR10381hmmpanther:PTHR10381:SF15
HOGENOM:HOG000285833InParanoid:Q9XJ36IntAct:Q9XJ36InterPro:IPR001907InterPro:IPR023562InterPro:IPR029045KEGG:ath:AT1G12410
KO:K01358OMA:MAVSFNTPANTHER:PTHR10381PaxDb:Q9XJ36PDB:1R97PDBsum:1R97Pfam:PF00574
Pfam:Q9XJ36PhylomeDB:Q9XJ36PIR:T52454PRIDE:Q9XJ36PRINTS:PR00127PRO:PR:Q9XJ36ProteinModelPortal:Q9XJ36
Proteomes:UP000006548RefSeq:NP_563907.1SMR:Q9XJ36STRING:3702.AT1G12410.1SUPFAM:SSF52096TAIR:AT1G12410tair10-symbols:CLP2
tair10-symbols:CLPR2tair10-symbols:NCLPP2UniGene:At.20902UniProt:Q9XJ36
Coordinates (TAIR10) chr1:+:4223099..4224954
Molecular Weight (calculated) 31210.30 Da
IEP (calculated) 9.49
GRAVY (calculated) -0.43
Length 279 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVSFNTTLH QPSLSPSCSI KLYSGLKPQS ASFLASGYQN LNKEFYGRVY KSLQSGTGKA SRSRVKMMPI GTPRVPYRNR EEGTWQWVDI WNALYRERVI
101: FIGQNIDEEF SNQILATMLY LDTLDDSRRI YMYLNGPGGD LTPSLAIYDT MKSLKSPVGT HCVGLAYNLA GFLLAAGEKG HRFAMPLSRI ALQSPAGAAR
201: GQADDIQNEA KELSRIRDYL FNELAKNTGQ PAERVFKDLS RVKRFNAEEA IEYGLIDKIV RPPRIKEDAP RQDESAGLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)