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AT1G12390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.928
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Cornichon family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cornichon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling pathway; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: Cornichon family protein (TAIR:AT1G12340.1); Has 617 Blast hits to 617 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 324; Fungi - 159; Plants - 93; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Protein Annotations
BioGrid:23034eggNOG:ENOG4111MWHeggNOG:KOG2729EMBL:AC025416EMBL:AK227496EMBL:BT004573EMBL:CP002684
EnsemblPlants:AT1G12390EnsemblPlants:AT1G12390.1entrez:837794GeneID:837794Genevisible:Q84W04GO:GO:0005622GO:GO:0016021
GO:GO:0035556Gramene:AT1G12390.1hmmpanther:PTHR12290hmmpanther:PTHR12290:SF18HOGENOM:HOG000214661InParanoid:Q84W04IntAct:Q84W04
InterPro:IPR003377KEGG:ath:AT1G12390OMA:ALELEHMPaxDb:Q84W04Pfam:PF03311Pfam:Q84W04PhylomeDB:Q84W04
PRO:PR:Q84W04ProteinModelPortal:Q84W04Proteomes:UP000006548RefSeq:NP_172701.2SMART:SM01398STRING:3702.AT1G12390.1TAIR:AT1G12390
TMHMM:TMhelixUniGene:At.51586UniGene:At.70435UniProt:Q84W04
Coordinates (TAIR10) chr1:+:4220347..4221481
Molecular Weight (calculated) 16437.30 Da
IEP (calculated) 4.73
GRAVY (calculated) 0.69
Length 137 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)