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AT1G12310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G62820.1); Has 15156 Blast hits to 13043 proteins in 1439 species: Archae - 0; Bacteria - 35; Metazoa - 6065; Fungi - 3861; Plants - 3197; Viruses - 0; Other Eukaryotes - 1998 (source: NCBI BLink).
Protein Annotations
BioGrid:23025eggNOG:COG5126eggNOG:KOG0027EMBL:AC025416EMBL:AY045587EMBL:AY094026EMBL:CP002684
EMBL:Z47401EnsemblPlants:AT1G12310EnsemblPlants:AT1G12310.1entrez:837785Gene3D:1.10.238.10GeneID:837785Genevisible:Q94AZ4
GO:GO:0005509GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0005886Gramene:AT1G12310.1hmmpanther:PTHR23050
hmmpanther:PTHR23050:SF214HOGENOM:HOG000233018InParanoid:Q94AZ4IntAct:Q94AZ4InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247
KEGG:ath:AT1G12310KO:K13448OMA:DFPRFLEPaxDb:Q94AZ4Pfam:PF13405Pfam:PF13499Pfam:Q94AZ4
Pfscan:PS50222PhylomeDB:Q94AZ4PIR:A86258PRIDE:Q94AZ4PRO:PR:Q94AZ4PROSITE:PS00018PROSITE:PS50222
ProteinModelPortal:Q94AZ4Proteomes:UP000006548RefSeq:NP_172695.1scanprosite:PS00018SMART:SM00054SMR:Q94AZ4STRING:3702.AT1G12310.1
SUPFAM:SSF47473TAIR:AT1G12310UniGene:At.20071UniProt:Q94AZ4
Coordinates (TAIR10) chr1:-:4187500..4187946
Molecular Weight (calculated) 16517.70 Da
IEP (calculated) 4.54
GRAVY (calculated) -0.34
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKDGLSDDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTQAQL KSIIASENLS SPFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)