AT1G12280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : LRR and NB-ARC domains-containing disease resistance protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 17827 Blast hits to 16139 proteins in 646 species: Archae - 26; Bacteria - 895; Metazoa - 2143; Fungi - 215; Plants - 14237; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:4174875..4177559 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 102647.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.25 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 894 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGACLTLSFS CDEVVNQISQ GLCINVGYIC ELSKNVVAMK KDMEVLKKKR DDVKRRVDIE EFTRRRERLS QVQGWLTNVS TVENKFNELL TTNDAELQRL 101: CLFGFCSKNV KMSYLYGKRV VLMLKEIESL SSQGDFDTVT LATPIARIEE MPIQPTIVGQ ETMLERVWTR LTEDGDEIVG LYGMGGVGKT TLLTRINNKF 201: SEKCSGFGVV IWVVVSKSPD IHRIQGDIGK RLDLGGEEWD NVNENQRALD IYNVLGKQKF VLLLDDIWEK VNLEVLGVPY PSRQNGCKVV FTTRSRDVCG 301: RMRVDDPMEV SCLEPNEAWE LFQMKVGENT LKGHPDIPEL ARKVAGKCCG LPLALNVIGE TMACKRMVQE WRNAIDVLSS YAAEFPGMEQ ILPILKYSYD 401: NLNKEQVKPC FLYCSLFPED YRMEKERLID YWICEGFIDE NESRERALSQ GYEIIGILVR ACLLLEEAIN KEQVKMHDVV REMALWIASD LGEHKERCIV 501: QVGVGLREVP KVKNWSSVRR MSLMENEIEI LSGSPECLEL TTLFLQKNDS LLHISDEFFR CIPMLVVLDL SGNSSLRKLP NQISKLVSLR YLDLSWTYIK 601: RLPVGLQELK KLRYLRLDYM KRLKSISGIS NISSLRKLQL LQSKMSLDMS LVEELQLLEH LEVLNISIKS SLVVEKLLNA PRLVKCLQIL VLRGVQEESS 701: GVLTLPDMDN LNKVIIRKCG MCEIKIERKT LSLSSNRSPK TQFLHNLSTV HISSCDGLKD LTWLLFAPNL TSLEVLDSEL VEGIINQEKA MTMSGIIPFQ 801: KLESLRLHNL AMLRSIYWQP LSFPCLKTIH ITKCPELRKL PLDSEIAIRD EELVIKYQEE EWLERVEWDN EATRLRFLPF FKFFGPEWQV SYVR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)