AT1G12230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Aldolase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Aldolase superfamily protein; FUNCTIONS IN: transaldolase activity, zinc ion binding; INVOLVED IN: glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, carbohydrate metabolic process, metabolic process, pentose-phosphate shunt, non-oxidative branch; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Transaldolase (InterPro:IPR001585); Has 7355 Blast hits to 7354 proteins in 2152 species: Archae - 59; Bacteria - 5481; Metazoa - 167; Fungi - 228; Plants - 79; Viruses - 10; Other Eukaryotes - 1331 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4148050..4150708 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43996.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.88 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||
| Length | 405 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPLSLQSPPC ATLSASIRKG RWKTLAAGFS VTPLPAVNFS LRRSIPRILA SASSSSSPAS SSLEAGENNE LNAVSAFSEI VPDTVVFDDF ERFPPTAATV 101: SSALLLGICG LPDTIFRNAV DMALADSSCA GLETTESRLS CFFNKAIVNV GGDLVKLVPG RVSTEVDARL AYDTNGIIRK VHDLLRLYNE IDVPHDRLLF 201: KIPATWQGIE AARLLESEGI QTHMTFVYSF AQAAAASQAG ASVIQIFVGR LRDWARNHSG DTEIESAIKS GEDPGLALVK RSYNYIHKYG YKSKLMAAAV 301: RNKQDLFSLL GVDYVIAPLK VLQSLKDSPA IPDDEKYSFV RKLTPETATH YHFTNKELVK WDQLSLASSM GPASVELLSA GVEGYANQAK RVEELFGKIW 401: PPPNV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)