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AT1G12230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Aldolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Aldolase superfamily protein; FUNCTIONS IN: transaldolase activity, zinc ion binding; INVOLVED IN: glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, carbohydrate metabolic process, metabolic process, pentose-phosphate shunt, non-oxidative branch; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Transaldolase (InterPro:IPR001585); Has 7355 Blast hits to 7354 proteins in 2152 species: Archae - 59; Bacteria - 5481; Metazoa - 167; Fungi - 228; Plants - 79; Viruses - 10; Other Eukaryotes - 1331 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G12230-MONOMERBioCyc:ARA:GQT-2336-MONOMEREMBL:AC022522EMBL:BT002036EMBL:BT008487EMBL:CP002684EnsemblPlants:AT1G12230
EnsemblPlants:AT1G12230.1entrez:837776ExpressionAtlas:Q9FWX0Gene3D:3.20.20.70GeneID:837776GO:GO:0003824GO:GO:0005975
Gramene:AT1G12230.1hmmpanther:PTHR10683hmmpanther:PTHR10683:SF10InterPro:IPR001585InterPro:IPR013785KEGG:00030+2.2.1.2PANTHER:PTHR10683
Pfam:PF00923PhylomeDB:Q9FWX0PIR:D86257Proteomes:UP000006548Reactome:R-ATH-163754Reactome:R-ATH-71336RefSeq:NP_563900.1
SMR:Q9FWX0SUPFAM:SSF51569TAIR:AT1G12230UniGene:At.16219unipathway:UPA00115UniProt:Q9FWX0
Coordinates (TAIR10) chr1:+:4148050..4150708
Molecular Weight (calculated) 43996.50 Da
IEP (calculated) 6.88
GRAVY (calculated) -0.03
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MPLSLQSPPC ATLSASIRKG RWKTLAAGFS VTPLPAVNFS LRRSIPRILA SASSSSSPAS SSLEAGENNE LNAVSAFSEI VPDTVVFDDF ERFPPTAATV
101: SSALLLGICG LPDTIFRNAV DMALADSSCA GLETTESRLS CFFNKAIVNV GGDLVKLVPG RVSTEVDARL AYDTNGIIRK VHDLLRLYNE IDVPHDRLLF
201: KIPATWQGIE AARLLESEGI QTHMTFVYSF AQAAAASQAG ASVIQIFVGR LRDWARNHSG DTEIESAIKS GEDPGLALVK RSYNYIHKYG YKSKLMAAAV
301: RNKQDLFSLL GVDYVIAPLK VLQSLKDSPA IPDDEKYSFV RKLTPETATH YHFTNKELVK WDQLSLASSM GPASVELLSA GVEGYANQAK RVEELFGKIW
401: PPPNV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)