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AT1G12190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.837
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G12170.1); Has 1345 Blast hits to 1311 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1340; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
EMBL:AC022522EMBL:AY062364EMBL:AY062365EMBL:AY062366EMBL:AY062367EMBL:AY062368EMBL:AY062369
EMBL:AY062370EMBL:AY062371EMBL:AY062372EMBL:AY062373EMBL:AY062374EMBL:AY062375EMBL:AY062376
EMBL:AY062377EMBL:AY062378EMBL:AY062379EMBL:AY062380EMBL:AY062381EMBL:CP002684EnsemblPlants:AT1G12190
EnsemblPlants:AT1G12190.1entrez:837772GeneID:837772Genevisible:Q9FWW8Gramene:AT1G12190.1hmmpanther:PTHR32133hmmpanther:PTHR32133:SF127
HOGENOM:HOG000112505InParanoid:Q9FWW8InterPro:IPR001810InterPro:IPR006527InterPro:IPR017451KEGG:ath:AT1G12190OMA:VSKEWNT
PaxDb:Q9FWW8Pfam:PF00646Pfam:PF07734Pfam:Q9FWW8Pfscan:PS50181PhylomeDB:Q9FWW8PIR:H86256
PRIDE:Q9FWW8PRO:PR:Q9FWW8PROSITE:PS50181ProteinModelPortal:Q9FWW8Proteomes:UP000006548RefSeq:NP_172683.1SMART:SM00256
SMR:Q9FWW8STRING:3702.AT1G12190.1SUPFAM:SSF81383TAIR:AT1G12190TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.65905
UniProt:Q9FWW8
Coordinates (TAIR10) chr1:-:4132967..4134094
Molecular Weight (calculated) 43358.90 Da
IEP (calculated) 8.73
GRAVY (calculated) -0.32
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MACVKFPWEL MEEILYRVPS LSLSRFKTVS KEWNTLLNDK TFIKKHLALV RPQFRLWTNS KVYSVDVSLN DDPNIELREL PLDIPYVIDH RTTNFLPCND
101: LLFCASWWSN KAVVWNPSLR QTRLIKSGEE HFRFGGIGYD SGRPGKGYHI FGHSHSRLSV NGNTSKFIKR FYITKFESNA WKCIDDVSLG ENSIGGDSLD
201: NNNVSLNGNL YWTTNSYDTD EYLIQSFDFS KEIFKIFCVL PRKKDSSDIP VLSVFRGDRL SVLHKFKGTN NMEIWVTKNK INESVKAVVW MMFMTVSIPI
301: YKDSKPSYFI NDIYEKRLVM CCSDENGKAC VYIVKDQARK KIQLGFHVSE FSHCFYDPSL IPIPSETSGQ KISNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)