AT1G12150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.969 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF827) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT4G17210.1); Has 175296 Blast hits to 90319 proteins in 3640 species: Archae - 2475; Bacteria - 39608; Metazoa - 72017; Fungi - 13793; Plants - 10094; Viruses - 656; Other Eukaryotes - 36653 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:4123530..4125328 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62653.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.11 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.89 | ||||||||||||||||||||||||||||||||||||
| Length | 548 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVNIRVQKAP ESPRTMEVGE IDTRAPFQSV KAAVSLFGEV AVSKQRSTPR RSRLSSESVC DKETQLMLVH KEFMKIKQKL DNAESTRSRA LDDLSKAKKT 101: MEDLSNKLET VNKSKQSAID TKETVQQREE QLEHDKCHGS PPHHHELDVA REQYISTTVE LDAAKQQLNK IRQSFDSAMD FKATALNQAA EAQRALQVNS 201: AKVNELSKEI SDMKDAIHQL KLAAAQNLQE HANIVKEKDD LRECYRTAVE EAEKKLLVLR KEYEPELSRT LEAKLLETTS EIEVLREEMK KAHESEMNTV 301: KIITNELNEA TMRLQEAADD ECSLRSLVNS LRMELEDLRR EREELQQKEA ERLEIEETKK LEALKQESLK LEQMKTEAIE ARNEAANMNR KIESLKKETE 401: AAMIAAEEAE KRLELVIREV EEAKSAEEKV REEMKMISQK QESKKQDEES SGSKIKITIQ EFESLKRGAG ETEAAIEKKL ATIAAELEEI NKRRAEADNK 501: LEANLKAIEE MKQATELAQK SAESAEAAKR MVESELQRWR QQENVQLA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)