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AT1G12120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF863)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF863); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G62530.2); Has 160 Blast hits to 145 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 14; Plants - 101; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY6WeggNOG:ENOG410YTFYEMBL:AC022522EMBL:AY063911
EMBL:AY096669EMBL:CP002684EnsemblPlants:AT1G12120EnsemblPlants:AT1G12120.1
entrez:837764GeneID:837764Gramene:AT1G12120.1hmmpanther:PTHR33167
HOGENOM:HOG000124800InterPro:IPR008581KEGG:ath:AT1G12120OMA:GKRNPRI
Pfam:PF05904PhylomeDB:Q9FWW2PIR:B86256Proteomes:UP000006548
RefSeq:NP_172676.2STRING:3702.AT1G12120.1TAIR:AT1G12120UniGene:At.27148
UniProt:Q9FWW2
Coordinates (TAIR10) chr1:-:4114933..4116469
Molecular Weight (calculated) 54998.80 Da
IEP (calculated) 5.34
GRAVY (calculated) -0.93
Length 483 amino acids
Sequence (TAIR10)
(BLAST)
001: MYFFGLSKEE VLSQKHVVSY KETSKQNPIN MVTLFGRQVY QVKSESSPKL LKKDIDLRLP ADHYAYTNFH ETLGSEKFYS NGSSRDTVEM RFHPGHEANN
101: VKEVSATSWT GKRNPRIVID LEEPPPTWVS HRETTEHAQA SVSYVTVRNP DTKPSFFDRI SSNILMDVDQ SLVEDDSDKT TSKESSLLDL NSTPVDESVS
201: EPRYSLLQDL NCAYIEEETE TSYEKSGIDD GSTPLCSPQC QNVHEKDGTA SPASDTSCCT TENNSRIESR RSSSPRALQP SCRTRLEFTN TEDLLEENGC
301: CNEEDDSSEV IQMAAESLVH ISEISYQNQD LQSKLVLRTN SSSEDQDFPD KPEMGKAKPG CSYDSYERHT LGISETNTEE DFCVSSMALD ELNNITRDNN
401: KEIGLKLRRG RRMKNFQKEI LPSLTSLSRH EIREDMNILE AVLRSREYKK MQGKTKDVKF KANPRNKRSP PQRCVGKRRR KTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)