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AT1G12090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : extensin-like protein
Curator
Summary (TAIR10)
extensin-like protein (ELP)
Computational
Description (TAIR10)
extensin-like protein (ELP); FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G62510.1); Has 793 Blast hits to 787 proteins in 64 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 787; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1NAeggNOG:ENOG410YRRTEMBL:AC002131EMBL:AF104327EMBL:AY058186EMBL:AY091005EMBL:AY117222
EMBL:CP002684EnsemblPlants:AT1G12090EnsemblPlants:AT1G12090.1entrez:837761GeneID:837761Gramene:AT1G12090.1hmmpanther:PTHR31731
HOGENOM:HOG000237797InterPro:IPR016140InterPro:IPR027923KEGG:ath:AT1G12090OMA:VTIGKPPPfam:PF14547PhylomeDB:O65369
PIR:T51717Proteomes:UP000006548RefSeq:NP_172673.1SMART:SM00499SMR:O65369STRING:3702.AT1G12090.1SUPFAM:SSF47699
TAIR:AT1G12090tair10-symbols:ELPUniGene:At.22293UniGene:At.23809UniGene:At.24377UniProt:O65369
Coordinates (TAIR10) chr1:-:4090176..4090589
Molecular Weight (calculated) 13913.30 Da
IEP (calculated) 8.15
GRAVY (calculated) 0.51
Length 137 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSIALFL ALNLLFFTTI SACGSCTPCG GGCPSPKPKP TPKPTPSPSS GSSKCPKDTL KLGVCANVLN GLLDLTLGKP PVEPCCSLIQ GLADVEAAVC
101: LCTALKANIL GINLNLPISL SLLLNVCSKQ LPPGFQC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)