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AT1G12080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18998720 (2009): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Vacuolar calcium-binding protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Vacuolar calcium-binding protein-related; Has 7161 Blast hits to 3135 proteins in 433 species: Archae - 55; Bacteria - 867; Metazoa - 2008; Fungi - 476; Plants - 327; Viruses - 233; Other Eukaryotes - 3195 (source: NCBI BLink).
Protein Annotations
EMBL:AY086722EMBL:CP002684EnsemblPlants:AT1G12080EnsemblPlants:AT1G12080.1entrez:837760ExpressionAtlas:Q8LC93GeneID:837760
Gramene:AT1G12080.1KEGG:ath:AT1G12080ncoils:CoilProteomes:UP000006548RefSeq:NP_563898.1TAIR:AT1G12080UniGene:At.43537
UniProt:Q8LC93
Coordinates (TAIR10) chr1:+:4084289..4084888
Molecular Weight (calculated) 11675.30 Da
IEP (calculated) 3.84
GRAVY (calculated) -0.93
Length 104 amino acids
Sequence (TAIR10)
(BLAST)
001: MATVEVEQVT PVAVENVEVP TKTVEETVVE TEKKDEETEK KTEEKDEKTE VITETPVVEE EEKKAEEVTE TPAVVEEEKK TEVVEEKQTE VAAAEEVAVE
101: KAEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)