suba logo
AT1G12050.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : fumarylacetoacetase, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
fumarylacetoacetase, putative; FUNCTIONS IN: fumarylacetoacetase activity, catalytic activity; INVOLVED IN: aromatic amino acid family metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fumarylacetoacetase, C-terminal-like (InterPro:IPR002529), Fumarylacetoacetase, C-terminal-related (InterPro:IPR011234), Fumarylacetoacetase, N-terminal (InterPro:IPR015377), Fumarylacetoacetase (InterPro:IPR005959); Has 4441 Blast hits to 4434 proteins in 1063 species: Archae - 139; Bacteria - 2814; Metazoa - 297; Fungi - 179; Plants - 60; Viruses - 0; Other Eukaryotes - 952 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G12050-MONOMEReggNOG:COG0179eggNOG:KOG2843EMBL:AY094010
EMBL:CP002684EnsemblPlants:AT1G12050EnsemblPlants:AT1G12050.1entrez:837757
Gene3D:2.30.30.230Gene3D:3.90.850.10GeneID:837757GO:GO:0004334
GO:GO:0005829GO:GO:0006572GO:GO:0008219GO:GO:1902000
Gramene:AT1G12050.1gramene_pathway:3.7.1.2gramene_pathway:TYRFUMCAT-PWYhmmpanther:PTHR11820
hmmpanther:PTHR11820:SF1HOGENOM:HOG000256845InterPro:IPR005959InterPro:IPR011234
InterPro:IPR015377KEGG:00350+3.7.1.2KEGG:00643+3.7.1.2KEGG:ath:AT1G12050
KO:K01555OMA:LPNWLHIPANTHER:PTHR11820:SF1Pfam:PF01557
Pfam:PF09298PhylomeDB:Q8RW90Proteomes:UP000006548Reactome:R-ATH-71182
RefSeq:NP_172669.2SMR:Q8RW90STRING:3702.AT1G12050.1SUPFAM:0047267
SUPFAM:SSF56529SUPFAM:SSF63433TAIR:AT1G12050TIGRfam:TIGR01266
TIGRFAMs:TIGR01266UniGene:At.10627unipathway:UPA00139UniProt:Q8RW90
Coordinates (TAIR10) chr1:+:4072904..4075856
Molecular Weight (calculated) 46098.00 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.21
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MALLKSFIDV GSDSHFPIQN LPYGVFKPES NSTPRPAVAI GDLVLDLSAI SEAGLFDGLI LKDADCFLQP NLNKFLAMGR PAWKEARSTL QRILSSNEPI
101: LRDNDVLRRK SFHQMSKVEM IVPMVIGDYT DFFASMHHAK NCGLMFRGPE NAINPNWFRL PIAYHGRASS IVISGTDIIR PRGQGHPQGN SEPYFGPSKK
201: LDFELEMAAV VGPGNELGKP IDVNNAADHI FGLLLMNDWS ARDIQAWEYV PLGPFLGKSF GTTISPWIVT LDALEPFGCQ APKQDPPPLP YLAEKESVNY
301: DISLEVQLKP SGRDDSCVIT KSNFQNLYWT ITQQLAHHTV NGCNLRPGDL LGTGTISGPE PDSYGCLLEL TWNGQKPLSL NGTTQTFLED GDQVTFSGVC
401: KGDGYNVGFG TCTGKIVPSP P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)