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AT1G12030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.933
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF506)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT1G62420.1); Has 393 Blast hits to 391 proteins in 26 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 387; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZXEeggNOG:ENOG410YRP8EMBL:AC002131EMBL:AK175520EMBL:BT010654EMBL:CP002684EnsemblPlants:AT1G12030
EnsemblPlants:AT1G12030.1entrez:837755GeneID:837755Gramene:AT1G12030.1hmmpanther:PTHR31579hmmpanther:PTHR31579:SF15HOGENOM:HOG000093112
InterPro:IPR006502KEGG:ath:AT1G12030OMA:ARPTTRYPANTHER:PTHR31579Pfam:PF04720PhylomeDB:O65376PIR:D86255
Proteomes:UP000006548RefSeq:NP_172667.1STRING:3702.AT1G12030.1TAIR:AT1G12030TIGRfam:TIGR01615TIGRFAMs:TIGR01615UniGene:At.42096
UniProt:O65376
Coordinates (TAIR10) chr1:-:4064751..4066319
Molecular Weight (calculated) 33659.70 Da
IEP (calculated) 5.85
GRAVY (calculated) -0.61
Length 295 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEIGGRFIR TAAAFDVAAA RARPPCASSS GSDHSPDDTE DLWDLVESFI DREVETLPED AFQEEEDDKS DEDYEDVKER LREILENHGG EERQRIMDEA
101: VNASRVFAGE KRHFMAYLRN KGFDAGLCKS RWEKFGKNTA GKYEYVDVKA GDKNRYIVET NLAGEFEIAR PTTRYLSVLA QVPRVFVGTP EELKQLVRIM
201: CFEIRRSMKR ADIFVPPWRR NGYMQAKWFG HYKRTSNEVV SRVKSCGCGP RVGFEESVKM TTFNGFKDGE MRRSGLKVGQ LTVAFNGSEV GLQIF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)