AT1G11970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.963 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin-like superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin-related protein 3 (TAIR:AT1G11980.1); Has 285 Blast hits to 285 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 22; Plants - 105; Viruses - 1; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4044370..4044669 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 11654.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||
| Length | 99 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
1: MCHVGYALIE LLENVTRKLE RECHHVNTLN SHGKREIAER QRFKVKSQFL SEKKIDIEID PMDKIEQIKE GIEEEIGIPS DDLTAEHYNR LRGSVIHRF | ||||||||||||||||||||||||
| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)