AT1G11960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ERD (early-responsive to dehydration stress) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ERD (early-responsive to dehydration stress) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT1G62320.1); Has 1452 Blast hits to 1271 proteins in 185 species: Archae - 0; Bacteria - 4; Metazoa - 184; Fungi - 702; Plants - 435; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:4039871..4043143 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88284.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.15 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.12 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 771 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATLGDIGVA AAINILTAII FLLAFAILRI QPFNDRVYFP KWYLKGIRSS PLHSGALVSK FVNVNLGSYL RFLNWMPAAL KMPEPELIDH AGLDSAVYLR 101: IYLIGLKIFV PIALLAWSIL VPVNWTSHGL QLAKLRNVTS SDIDKLSISN IENGSDRFWT HLVMAYAFTF WTCYVLMKEY EKVAAMRLAF LQNEQRRPDQ 201: FTVLVRNVPA DPDESISDSV EHFFLVNHPD HYLTHQVVYN ANDLAALVEQ KKSTQNWLDY YQLKYTRNQE HKPRIKTGFL GLWGKKVDAI DHYIAEIEKL 301: NEQIMEERKK VKKDDTSVMP AAFVSFKTRW GAAVSAQTQQ SSDPTEWLTE WAPEAREVFW SNLAIPYVSL TVRRLIMHIA FFFLTFFFMI PIAFVQSLAS 401: IEGIEKNAPF LKSIIENDLF KSVIQGFLPG IVLKLFLIFL PSILMVMSKF EGFVSLSSLE RRAAFRYYIF NLINVFLGSV ITGSAFEQLD SFLKQSAKEI 501: PKTVGVAIPI KATFFITYIM VDGWAGIAGE ILRLKPLIFF HIKNSLLVKT EKDREEAMNP GQINYHATEP RIQLYFLLGL VYAPVTPVLL PFIIIFFALA 601: YLVFRHQIIN VYNQEYESAA RFWPDVHGRI ISALIIAQIL LMGLLSTKGA AQSTPFLLFL PIITFFFHRY CKGRYEPAFL RHPLKEAMVK DTLERAREPN 701: FNLKPYLQKA YIHPVFKDND YEDSRFDEIS GYCIEDSDEE CVTVPTKRQS RINTPAVSHA SRGSSRSPPS K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)