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AT1G11880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.723
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transferases, transferring hexosyl groups
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transferases, transferring hexosyl groups; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mannosyltransferase, PIG-V (InterPro:IPR007315); Has 490 Blast hits to 469 proteins in 237 species: Archae - 6; Bacteria - 111; Metazoa - 123; Fungi - 146; Plants - 40; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Protein Annotations
CAZy:GT76eggNOG:COG5542eggNOG:KOG2647EMBL:BT012607EMBL:BT015157EMBL:CP002684EMBL:KJ139013
EnsemblPlants:AT1G11880EnsemblPlants:AT1G11880.1entrez:837736GeneID:837736GO:GO:0004584GO:GO:0006506GO:GO:0016021
Gramene:AT1G11880.1hmmpanther:PTHR12468hmmpanther:PTHR12468:SF2InterPro:IPR007315KEGG:00051+2.4.1.-KEGG:00512+2.4.1.-KEGG:00513+2.4.1.-
KEGG:00514+2.4.1.-KEGG:00522+2.4.1.-KEGG:00533+2.4.1.-KEGG:00540+2.4.1.-KEGG:00550+2.4.1.-KEGG:00561+2.4.1.-KEGG:00563+2.4.1.-
KEGG:00600+2.4.1.-KEGG:00601+2.4.1.-KEGG:00603+2.4.1.-KEGG:00604+2.4.1.-KEGG:00906+2.4.1.-KEGG:00908+2.4.1.-KEGG:00941+2.4.1.-
KEGG:00942+2.4.1.-KEGG:00944+2.4.1.-KEGG:00945+2.4.1.-KEGG:00965+2.4.1.-KEGG:ath:AT1G11880KO:K07542OMA:ALFVWCT
PANTHER:PTHR12468Pfam:PF04188PhylomeDB:Q6NKT6Proteomes:UP000006548Reactome:R-ATH-162710RefSeq:NP_172652.2STRING:3702.AT1G11880.1
TAIR:AT1G11880TMHMM:TMhelixUniGene:At.42106unipathway:UPA00196UniProt:Q6NKT6
Coordinates (TAIR10) chr1:-:4007909..4010327
Molecular Weight (calculated) 55458.70 Da
IEP (calculated) 9.51
GRAVY (calculated) 0.36
Length 489 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKALESNSK SRKETILIKY AIFSRLLVLF LTILWRSLLQ PYDTSAALNP PCLYHKEDSF PFLVANAASR SLENSVVWDS VYFLRITECG YEYEQTYAFL
101: PLLPFFISLL SRTVFAPLVP LIGLRAVMVL SGFTVSNLAF IFAAIYLFRV SVIILKDTEA SFRASIIFCF NPASIFYSSI YSESLYALFS IGGVYHLLSG
201: TSNVGVLWFA LSGCARSNGI LNAGYICFQT MHRAYEALYQ KRRAYLAMQV FIAGFLRCIC ICLPFVAFQA YGYYNICHGH TRDEVRPWCK GRIPLLYNFI
301: QSHYWGVGFL KYFQFKQLPN FLLASPILSL AVCSIMSYMK SRPELFISLG FQATEKEKRS AARLYSLKDA VEPSVKTSTN EGNHDIRQRK PSSKKDVTGT
401: KVAPEKSGYL SADVFPFIVH LSFMVTTAFF IMHVQVATRF LSASPPLYWF ASSLIGSPKH SKWGYLIWSY CAAYILLGTL LFSNFYPFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)