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AT1G11770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD-binding Berberine family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G01980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G11770-MONOMEReggNOG:COG0277eggNOG:ENOG410IKGWEMBL:AC007296EMBL:CP002684EnsemblPlants:AT1G11770EnsemblPlants:AT1G11770.1
entrez:837722Gene3D:3.30.43.10Gene3D:3.30.465.10GeneID:837722GO:GO:0016614GO:GO:0050660Gramene:AT1G11770.1
hmmpanther:PTHR32448hmmpanther:PTHR32448:SF34HOGENOM:HOG000238933InterPro:IPR006094InterPro:IPR012951InterPro:IPR016166InterPro:IPR016167
InterPro:IPR016169KEGG:ath:AT1G11770OMA:QNFFRDEPfam:PF01565Pfam:PF08031Pfscan:PS51387PhylomeDB:Q9SA99
PIR:F86251PROSITE:PS51387Proteomes:UP000006548RefSeq:NP_172642.3SMR:Q9SA99STRING:3702.AT1G11770.1SUPFAM:SSF56176
TAIR:AT1G11770UniGene:At.42110UniGene:At.75171UniProt:Q9SA99
Coordinates (TAIR10) chr1:+:3975679..3977289
Molecular Weight (calculated) 59797.50 Da
IEP (calculated) 9.86
GRAVY (calculated) -0.16
Length 536 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIFCLILFL ISSFISTSLA VEPPPETIYQ NFLQCFTNQT KAPPNSLADV VLPKTAAAFT PVLRAYIRNA RFNTTATPKP AIVIAARSES HVQAAVICTK
101: SLNIQLKTRS GGHDYEGVSY ISHVPFFVLD MSNLRNITVD PATESAWVGA GATLGEVYYR IWEKTKSHGF PAGVCPTVGA GGHISGGGYG NMIRKYGLSV
201: DYVTDAKIVD VNGQVLDRKG MGEDMFWAIN GGGGASFGVI LAFKIKLVPV PPTVTVFRVE KNLVENATEM VHKWQFVAPK TDPGLFMRLL LQPVTRNKMQ
301: TVRASVVALF LGDQNTVMSM LTKEFPELGL KKENCTEMTW IQSVMWWANN DNATQIKPEI LLDRNPDMAT FGKRKSDFVE KEITKDGLDF LFKKMIEVGK
401: IGLVFNPYGG IMSTVATTKT PFPHRKKLYK IQHSMNWKDP GTEAETSFLQ KAKSFYSYMA PFVTKNPRHT YINYRDLDIG VNTPGPNSYR VAEVFGRMYF
501: GENFDRLVKV KTAVDPQNFF RDEQSIPTLP GKPARR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)