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AT1G11750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:11278690 (2001): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CLP protease proteolytic subunit 6
Curator
Summary (TAIR10)
One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
Computational
Description (TAIR10)
CLP protease proteolytic subunit 6 (CLPP6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1); Has 13333 Blast hits to 13329 proteins in 3010 species: Archae - 2; Bacteria - 8425; Metazoa - 145; Fungi - 82; Plants - 1079; Viruses - 86; Other Eukaryotes - 3514 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G11750-MONOMERBioCyc:ARA:GQT-1448-MONOMERBioGrid:22959EC:3.4.21.92EMBL:AC007296EMBL:AF016621EMBL:AF348580
EMBL:AK229049EMBL:AY087248EMBL:CP002684EnsemblPlants:AT1G11750EnsemblPlants:AT1G11750.1entrez:837719ExpressionAtlas:Q9SAA2
Gene3D:3.90.226.10GeneID:837719Genevisible:Q9SAA2GO:GO:0004252GO:GO:0009570HAMAP:MF_00444hmmpanther:PTHR10381
hmmpanther:PTHR10381:SF8HOGENOM:HOG000285833InParanoid:Q9SAA2IntAct:Q9SAA2InterPro:IPR001907InterPro:IPR023562InterPro:IPR029045
InterPro:IPR033135MEROPS:S14.006ncoils:CoilPANTHER:PTHR10381PDB:1R93PDBsum:1R93Pfam:PF00574
Pfam:Q9SAA2PhylomeDB:Q9SAA2PIR:C86251PRIDE:Q9SAA2PRINTS:PR00127PRO:PR:Q9SAA2PROSITE:PS00382
ProteinModelPortal:Q9SAA2Proteomes:UP000006548RefSeq:NP_563893.1scanprosite:PS00382SMR:Q9SAA2SUPFAM:SSF52096TAIR:AT1G11750
tair10-symbols:CLPP6tair10-symbols:NCLPP1tair10-symbols:NCLPP6UniGene:At.10512UniGene:At.72667UniProt:Q9SAA2
Coordinates (TAIR10) chr1:+:3967609..3969535
Molecular Weight (calculated) 29383.60 Da
IEP (calculated) 9.71
GRAVY (calculated) -0.13
Length 271 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGLAISPPL GLSFSSRTRN PKPTSFLSHN QRNPIRRIVS ALQSPYGDSL KAGLSSNVSG SPIKIDNKAP RFGVIEAKKG NPPVMPSVMT PGGPLDLSSV
101: LFRNRIIFIG QPINAQVAQR VISQLVTLAS IDDKSDILMY LNCPGGSTYS VLAIYDCMSW IKPKVGTVAF GVAASQGALL LAGGEKGMRY AMPNTRVMIH
201: QPQTGCGGHV EDVRRQVNEA IEARQKIDRM YAAFTGQPLE KVQQYTERDR FLSASEALEF GLIDGLLETE Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)