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AT1G11720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : starch synthase 3
Curator
Summary (TAIR10)
Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).
Computational
Description (TAIR10)
starch synthase 3 (SS3); FUNCTIONS IN: starch synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: starch biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296), Carbohydrate binding domain, family 25 (InterPro:IPR005085); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1); Has 8453 Blast hits to 8330 proteins in 2963 species: Archae - 164; Bacteria - 3762; Metazoa - 19; Fungi - 103; Plants - 3720; Viruses - 1; Other Eukaryotes - 684 (source: NCBI BLink).
Protein Annotations
BioGrid:22956BRENDA:2.4.1.21EC:2.4.1.21eggNOG:COG0297eggNOG:ENOG410IDY1EMBL:AC007296EMBL:CP002684
EMBL:DQ241810EMBL:DQ415727EMBL:EF636491EnsemblPlants:AT1G11720EnsemblPlants:AT1G11720.1entrez:837716ExpressionAtlas:F4IAG2
GeneID:837716Genevisible:F4IAG2GO:GO:0004373GO:GO:0009011GO:GO:0009501GO:GO:0009507GO:GO:0010021
GO:GO:0019252GO:GO:0033201GO:GO:0042802GO:GO:2001070gramene_pathway:2.4.1.21gramene_pathway:PWY-622gramene_plant_reactome:1119477
gramene_plant_reactome:6875766HAMAP:MF_00484hmmpanther:PTHR12526hmmpanther:PTHR12526:SF341HOGENOM:HOG000294940InParanoid:F4IAG2InterPro:IPR005085
InterPro:IPR011835InterPro:IPR013534iPTMnet:F4IAG2KEGG:00500+2.4.1.21MINT:MINT-7299396ncoils:CoilPaxDb:F4IAG2
Pfam:F4IAG2Pfam:PF08323Pfam:PF16760PIR:H86250PRIDE:F4IAG2PRO:PR:F4IAG2ProMEX:F4IAG2
ProteinModelPortal:F4IAG2Proteomes:UP000006548RefSeq:NP_172637.2SMART:SM01066SMR:F4IAG2STRING:3702.AT1G11720.2SUPFAM:SSF53756
TAIR:AT1G11720tair10-symbols:ATSS3tair10-symbols:SS3UniGene:At.42115UniPathway:UPA00152unipathway:UPA00164UniProt:F4IAG2
Coordinates (TAIR10) chr1:+:3952460..3956840
Molecular Weight (calculated) 118519.00 Da
IEP (calculated) 6.49
GRAVY (calculated) -0.48
Length 1042 amino acids
Sequence (TAIR10)
(BLAST)
0001: MISYFLNQDF SRKKQGRMAA SGPKSSGPRG FGRRTTVGSA QKRTQKKNGE KDSNATSTAT NEVSGISKLP AAKVDVQKQS SVVLNERNVL DRSDIEDGSD
0101: RLDKKTTDDD DLLEQKLKLE RENLRRKEIE TLAAENLARG DRMFVYPVIV KPDEDIEVFL NRNLSTLNNE PDVLIMGAFN EWRWKSFTRR LEKTWIHEDW
0201: LSCLLHIPKE AYKMDFVFFN GQSVYDNNDS KDFCVEIKGG MDKVDFENFL LEEKLREQEK LAKEEAERER QKEEKRRIEA QKAAIEADRA QAKAETQKRR
0301: ELLQPAIKKA VVSAENVWYI EPSDFKAEDT VKLYYNKRSG PLTNSKELWL HGGFNNWVDG LSIVVKLVNA ELKDVDPKSG NWWFAEVVVP GGALVIDWVF
0401: ADGPPKGAFL YDNNGYQDFH ALVPQKLPEE LYWLEEENMI FRKLQEDRRL KEEVMRAKME KTARLKAETK ERTLKKFLLS QKDVVYTEPL EIQAGNPVTV
0501: LYNPANTVLN GKPEVWFRGS FNRWTHRLGP LPPQKMEATD DESSHVKTTA KVPLDAYMMD FVFSEKEDGG IFDNKNGLDY HLPVVGGISK EPPLHIVHIA
0601: VEMAPIAKVG GLGDVVTSLS RAVQELNHNV DIVFPKYDCI KHNFVKDLQF NRSYHWGGTE IKVWHGKVEG LSVYFLDPQN GLFQRGCVYG CADDAGRFGF
0701: FCHAALEFLL QGGFHPDILH CHDWSSAPVS WLFKDHYTQY GLIKTRIVFT IHNLEFGANA IGKAMTFADK ATTVSPTYAK EVAGNSVISA HLYKFHGIIN
0801: GIDPDIWDPY NDNFIPVPYT SENVVEGKRA AKEELQNRLG LKSADFPVVG IITRLTHQKG IHLIKHAIWR TLERNGQVVL LGSAPDPRIQ NDFVNLANQL
0901: HSSHGDRARL VLTYDEPLSH LIYAGADFIL VPSIFEPCGL TQLIAMRYGA VPVVRKTGGL FDTVFDVDHD KERAQAQVLE PNGFSFDGAD APGVDYALNR
1001: AISAWYDGRE WFNSLCKTVM EQDWSWNRPA LEYLELYHSA RK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)