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AT1G11650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.696
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RBP45B; FUNCTIONS IN: RNA binding; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1); Has 20995 Blast hits to 13178 proteins in 763 species: Archae - 6; Bacteria - 1690; Metazoa - 10875; Fungi - 2403; Plants - 4255; Viruses - 0; Other Eukaryotes - 1766 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:Z29166EnsemblPlants:AT1G11650EnsemblPlants:AT1G11650.1entrez:837708ExpressionAtlas:Q42215
Gene3D:3.30.70.330GO:GO:0000166GO:GO:0003676hmmpanther:PTHR24012hmmpanther:PTHR24012:SF333InterPro:IPR000504InterPro:IPR012677
PaxDb:Q42215Pfam:PF00076Pfscan:PS50102PROSITE:PS50102ProteinModelPortal:Q42215SMART:SM00360STRING:3702.AT1G11650.2
SUPFAM:SSF54928tair10-symbols:ATRBP45Btair10-symbols:RBP45BUniProt:Q42215
Coordinates (TAIR10) chr1:+:3914895..3917301
Molecular Weight (calculated) 33432.30 Da
IEP (calculated) 5.95
GRAVY (calculated) -0.42
Length 306 amino acids
Sequence (TAIR10)
(BLAST)
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)