suba logo
AT1G11630.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide repeat 336 (TAIR:AT1G61870.1); Has 27426 Blast hits to 8035 proteins in 245 species: Archae - 4; Bacteria - 14; Metazoa - 220; Fungi - 290; Plants - 26279; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC007296EMBL:AF385742EMBL:AY081736EMBL:AY087752EMBL:CP002684
EnsemblPlants:AT1G11630EnsemblPlants:AT1G11630.1entrez:837707Gene3D:1.25.40.10GeneID:837707Genevisible:Q9SAB4GO:GO:0005739
Gramene:AT1G11630.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF579HOGENOM:HOG000238350InParanoid:Q9SAB4InterPro:IPR002885InterPro:IPR011990
iPTMnet:Q9SAB4KEGG:ath:AT1G11630OMA:LYGRANMPaxDb:Q9SAB4Pfam:PF13041Pfam:Q9SAB4Pfscan:PS51375
PhylomeDB:Q9SAB4PIR:G86249PRIDE:Q9SAB4PRO:PR:Q9SAB4PROSITE:PS51375ProteinModelPortal:Q9SAB4Proteomes:UP000006548
RefSeq:NP_172629.1SMR:Q9SAB4STRING:3702.AT1G11630.1TAIR:AT1G11630TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.11186
UniProt:Q9SAB4
Coordinates (TAIR10) chr1:-:3913168..3914385
Molecular Weight (calculated) 46391.50 Da
IEP (calculated) 8.28
GRAVY (calculated) -0.14
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFLFRIRTS EFILQKATQF RLKSSSSSIF TLKSLTSKQK KSRDTLSLLK SENNPDRILE ICRSTSLSPD YHVDRIIFSV AVVTLAREKH FVAVSQLLDG
101: FIQNQPDPKS ESFAVRAIIL YGRANMLDRS IQTFRNLEQY EIPRTVKSLN ALLFACLMAK DYKEANRVYL EMPKMYGIEP DLETYNRMIR VLCESGSTSS
201: SYSIVAEMER KWIKPTAASF GLMIDGFYKE EKFDEVRKVM RMMDEFGVHV GVATYNIMIQ CLCKRKKSAE AKALIDGVMS CRMRPNSVTY SLLIHGFCSE
301: ENLDEAMNLF EVMVCNGYKP DSECYFTLIH CLCKGGDFET ALILCRESME KNWVPSFSVM KWLVNGLASR SKVDEAKELI AVVKEKFTRN VDLWNEVEAA
401: LPLPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)