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AT1G11560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.832
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Oligosaccharyltransferase complex/magnesium transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Oligosaccharyltransferase complex/magnesium transporter family protein; FUNCTIONS IN: oligosaccharide transmembrane transporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Magnesium transporter protein 1 (InterPro:IPR006844), Oligosaccharyltransferase complex/magnesium transporter (InterPro:IPR021149); BEST Arabidopsis thaliana protein match is: Oligosaccharyltransferase complex/magnesium transporter family protein (TAIR:AT1G61790.1); Has 312 Blast hits to 312 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 155; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR1FeggNOG:KOG2603EMBL:AC011661EMBL:CP002684EnsemblPlants:AT1G11560EnsemblPlants:AT1G11560.1entrez:837699
GeneID:837699Genevisible:F4I8X8GO:GO:0005789GO:GO:0016021Gramene:AT1G11560.1HOGENOM:HOG000029710InParanoid:F4I8X8
InterPro:IPR021149KEGG:ath:AT1G11560KO:K12669OMA:CEIESTHPaxDb:F4I8X8Pfam:F4I8X8Pfam:PF04756
PIR:H86248PRIDE:F4I8X8PRO:PR:F4I8X8ProteinModelPortal:F4I8X8Proteomes:UP000006548RefSeq:NP_172622.1STRING:3702.AT1G11560.1
TAIR:AT1G11560TMHMM:TMhelixUniGene:At.51572UniProt:F4I8X8
Coordinates (TAIR10) chr1:+:3881788..3882819
Molecular Weight (calculated) 39164.40 Da
IEP (calculated) 6.41
GRAVY (calculated) 0.17
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MVIQTNLSYR FFILIVFLFT LANPKSDSDL KNELVSLRST AESGVISFNN DDVSKFITSV STPRPYSLII FFDAVHLHGN SQLRLPEFRR EFRLVSATFI
101: TNNNNESNGT KLFFCEIEST HSEASFRRFA VESLPHISLV SPTTENLTES DQMDGGDFTG LAESMAEFVE RQTKLTVCSI QRPPLISKTQ IGIIVAIIII
201: STPILIKKIL KGETLLHDHR IWLVGAVFVY FFSVSGTMHN IIREMPMYIK DYEDSSKFVF FIEESEMQLG AEGFFVGFLY TVVGLLLAFV TNVVVRVKKL
301: DEQRMAMLLA LSISFWAVRK VVYLDNWKTG YEIYPYWPSS WRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)