suba logo
AT1G11530.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.458
plasma membrane 0.331
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : C-terminal cysteine residue is changed to a serine 1
Curator
Summary (TAIR10)
Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity.
Computational
Description (TAIR10)
C-terminal cysteine residue is changed to a serine 1 (CXXS1); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin H-type 1 (TAIR:AT3G51030.1); Has 9365 Blast hits to 9347 proteins in 2322 species: Archae - 165; Bacteria - 5071; Metazoa - 947; Fungi - 584; Plants - 1098; Viruses - 0; Other Eukaryotes - 1500 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0526eggNOG:KOG0907EMBL:AC011661EMBL:AF144390EMBL:AF144392EMBL:AY085990EMBL:BT024568
EMBL:CP002684EnsemblPlants:AT1G11530EnsemblPlants:AT1G11530.1entrez:837696Gene3D:3.40.30.10GeneID:837696Genevisible:Q8LDI5
GO:GO:0000103GO:GO:0003756GO:GO:0005829GO:GO:0005886GO:GO:0006457GO:GO:0006662GO:GO:0015035
GO:GO:0016671GO:GO:0034599GO:GO:0045454GO:GO:0055114Gramene:AT1G11530.1hmmpanther:PTHR10438hmmpanther:PTHR10438:SF242
HOGENOM:HOG000292977InParanoid:Q8LDI5InterPro:IPR005746InterPro:IPR012336InterPro:IPR013766KEGG:ath:AT1G11530KO:K03671
OMA:CPIVAHFPANTHER:PTHR10438PaxDb:Q8LDI5Pfam:PF00085Pfam:Q8LDI5Pfscan:PS51352PhylomeDB:Q8LDI5
PIR:F86248PRIDE:Q8LDI5PRO:PR:Q8LDI5PROSITE:PS51352ProteinModelPortal:Q8LDI5Proteomes:UP000006548RefSeq:NP_172620.1
SMR:Q8LDI5STRING:3702.AT1G11530.1SUPFAM:SSF52833TAIR:AT1G11530tair10-symbols:ATCXXS1tair10-symbols:CXXS1UniGene:At.11326
UniGene:At.63949UniProt:Q8LDI5
Coordinates (TAIR10) chr1:+:3874518..3875311
Molecular Weight (calculated) 13335.10 Da
IEP (calculated) 5.13
GRAVY (calculated) 0.14
Length 118 amino acids
Sequence (TAIR10)
(BLAST)
001: MARVVKIDSA ESWNFYVSQA KNQNCPIVAH FTALWCIPSV FMNSFFEELA FNYKDALFLI VDVDEVKEVA SQLEVKAMPT FLFLKDGNAM DKLVGANPDE
101: IKKRVDGFVQ SSRVVHIA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)