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AT1G11420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DOMAIN OF UNKNOWN FUNCTION 724 2
Curator
Summary (TAIR10)
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins.
Computational
Description (TAIR10)
DOMAIN OF UNKNOWN FUNCTION 724 2 (DUF2); FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 603 Blast hits to 525 proteins in 93 species: Archae - 19; Bacteria - 36; Metazoa - 149; Fungi - 17; Plants - 302; Viruses - 1; Other Eukaryotes - 79 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JU4SeggNOG:ENOG411077KEMBL:CP002684EnsemblPlants:AT1G11420
EnsemblPlants:AT1G11420.1entrez:837684GeneID:837684Gramene:AT1G11420.1
hmmpanther:PTHR31917hmmpanther:PTHR31917:SF20InParanoid:F4I8W1InterPro:IPR007930
InterPro:IPR008395InterPro:IPR014002KEGG:ath:AT1G11420ncoils:Coil
OMA:RYMVSFGPaxDb:F4I8W1Pfam:PF05266Pfam:PF05641
PRIDE:F4I8W1ProteinModelPortal:F4I8W1Proteomes:UP000006548RefSeq:NP_172609.1
SMART:SM00743STRING:3702.AT1G11420.1TAIR:AT1G11420tair10-symbols:ATDUF2
tair10-symbols:DUF2UniGene:At.51568UniProt:F4I8W1
Coordinates (TAIR10) chr1:-:3844581..3846872
Molecular Weight (calculated) 70275.30 Da
IEP (calculated) 7.36
GRAVY (calculated) -0.63
Length 604 amino acids
Sequence (TAIR10)
(BLAST)
001: MEQMIFIRKD DKVEVFSEEE ELKGSYYRAI LEDNPTKSGH NKLKVRYLTQ LNEHRLAPLT EFVDQRFIRP VPSEDVNDGV VFVEGLMVDA YLKDGWWTGV
101: VVKTMEDEKF LVYFDCPPDI IQFEKKKLRV HLDWTGFKWI RPDNKELVKS VFSCGTMVEL RFDCAWIPVI VIKELEKDKR FLVKYWNKSY SCRESKNLIV
201: DSLRLRPMQP PLSVGKYELL DHVEAFSGFE WRQGVVRGIV FEGRYMVSFG ATKEASQFNH SDIRPPMEWE DGVWHKRTKP KRQKETSLDG NRNVQTKEPP
301: GNEMADDVKK ESGLPITLGV TATKNKTQGK VSPVPMKNGF GNESTREKMP EEPKIKYYTR KRKRGGLKLN SYINKTVLSS DRTPNVVKNS ASNAEENHAK
401: HTIMVLPFAK KSPVWKTYES LEVFKSVSHS LHFSPLFETK QDFREGYAIG MMVTYFGLLE KFKDLEADVP VSQLNSLKDS FSELEKHGFN VTTPLSRIDK
501: LLALKDRQLY IMEELKGFDK EMTNEFSKAK QEFDDMEQKI LEVKHKIIEL QRQEAALKEQ KEAEKEQKDA AWKKICQMES CAKDLNVELE DVEFEFETIL
601: SAPW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)