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AT1G11240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J5A7eggNOG:ENOG410XZ3IEMBL:AY062738EMBL:AY084562EMBL:AY093366EMBL:CP002684EnsemblPlants:AT1G11240
EnsemblPlants:AT1G11240.1entrez:837665GeneID:837665Gramene:AT1G11240.1hmmpanther:PTHR14577HOGENOM:HOG000240056InterPro:IPR019186
KEGG:ath:AT1G11240KO:K14851ncoils:CoilOMA:ARHIGKRPANTHER:PTHR14577Pfam:PF09805PhylomeDB:Q8W494
PRO:PR:Q8W494Proteomes:UP000006548RefSeq:NP_563886.1STRING:3702.AT1G11240.1TAIR:AT1G11240UniGene:At.27249UniProt:Q8W494
Coordinates (TAIR10) chr1:-:3766936..3768212
Molecular Weight (calculated) 22697.60 Da
IEP (calculated) 10.53
GRAVY (calculated) -1.47
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MTGGLHNEEA GSLATPTSAR HIGKRARKNK SLTVSFDEKD LKDFVTGFHK RKKKRRKEAQ KQQEEAFRRK RIEARKNRKL EELMVAGNGE DNEDGEAEDE
101: VDAEDEEAEP DASTSATTMY DTGELKVTVT TSEISREEEE PIRKEKTQST ESGSTAKAST KQPVPVRKTK PMKQSRRRST TKTMKKRDKK KQARGIKTSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)