AT1G11200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.947 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF300) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF300); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT4G21570.1); Has 839 Blast hits to 837 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 195; Plants - 241; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:3753896..3755459 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34169.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.46 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.58 | ||||||||||||||||||||||||||||
| Length | 295 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIDLSTLSPA EITVMGSVFC VLLSMHFTMQ LVSQHLFYWK KPNEQRAILI IVLMAPVYAI NSFVGLLDAK GSKPFFMFLD AVKECYEALV IAKFLALMYS 101: YVNISMSARI IPDEFKGREI HHSFPMTLFV PRTTHLDYLT LKQLKQWTWQ FCIIRPVCSI LMITLQILGI YPVWLSWIFT AILNVSVSLA LYSLVKFYHV 201: FAKELEPHKP LTKFMCVKGI VFFCFWQGIV LKILVGLGLI KSHHFWLEVD QLEEALQNVL VCLEMIVFSI IQQYAFHVAP YSGETEAKMR FNKRD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)