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AT1G10980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.957
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Lung seven transmembrane receptor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Lung seven transmembrane receptor family protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G61670.1); Has 670 Blast hits to 669 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 291; Fungi - 146; Plants - 175; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS1QeggNOG:KOG2568EMBL:AY924662EMBL:CP002684EMBL:DQ132646EMBL:U95973EnsemblPlants:AT1G10980
EnsemblPlants:AT1G10980.1entrez:837641GeneID:837641GO:GO:0005773GO:GO:0009506GO:GO:0016021Gramene:AT1G10980.1
hmmpanther:PTHR21229hmmpanther:PTHR21229:SF1HOGENOM:HOG000242452InterPro:IPR009637KEGG:ath:AT1G10980OMA:SWAILETPANTHER:PTHR21229
Pfam:PF06814PhylomeDB:O04088PIR:G86243Proteomes:UP000006548RefSeq:NP_172567.1STRING:3702.AT1G10980.1TAIR:AT1G10980
TMHMM:TMhelixUniGene:At.51561UniProt:O04088
Coordinates (TAIR10) chr1:-:3667531..3669821
Molecular Weight (calculated) 58161.20 Da
IEP (calculated) 6.78
GRAVY (calculated) 0.21
Length 516 amino acids
Sequence (TAIR10)
(BLAST)
001: MTNLFLGFLV ISFCLLGNLI HAADGSIHDY NNSGGFTKIA NARYFVGGSE GIYGSEFLDV HHASSDTPLL KGNSFIRFDD ITFVRTKESA SKQNSTLAAA
101: GLVEAILFEV KQRDRVGGSF FKSEDMCCTP KLADAGSCNL GEVMISADPN DPEWPKRIPT FFKRGEEEVK MSPEAVIIKK TGLYTVYFMT CDPELDGATI
201: RGRTVWKNRG GYLQGEKAPL KKFYASMLLA YVVLGLVWFP QVAQYWKDGI QLHSHINFVI AFTMGELAFL YLDFVYLDSA GTSPMEVTVW AITLSSMRKA
301: LSRLLLLVIS SGFGIVRPTL GGITLKMLLI GVLCFVISES LGLAMQFGNI SENGMNYLML SWAILETCFI QWIFRSLSKT LKKLKLNKRN ITKLQLYKMF
401: ATVLVIMVVL SFAWIYVEVY LYSSLSQFWK VKWIVPTLWY ILSYAMLVLI CLFWPPSEKP MRYLYVADME EETEEEDDLS TAETGMNATK AEYERSERKT
501: LLEAFILLLG NIPGEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)