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AT1G10950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transmembrane nine 1
Curator
Summary (TAIR10)
Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.
Computational
Description (TAIR10)
transmembrane nine 1 (TMN1); LOCATED IN: integral to membrane, Golgi apparatus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1); Has 1611 Blast hits to 1538 proteins in 326 species: Archae - 0; Bacteria - 16; Metazoa - 610; Fungi - 273; Plants - 454; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink).
Protein Annotations
BioGrid:22878eggNOG:ENOG410XSVBeggNOG:KOG1277EMBL:AF446365
EMBL:AK229917EMBL:AY054666EMBL:AY063907EMBL:AY081536
EMBL:BT008600EMBL:CP002684EMBL:U95973EnsemblPlants:AT1G10950
EnsemblPlants:AT1G10950.1entrez:837638GeneID:837638Genevisible:Q940G0
GO:GO:0000139GO:GO:0005768GO:GO:0005794GO:GO:0005797
GO:GO:0005801GO:GO:0005802GO:GO:0010008GO:GO:0016020
GO:GO:0016021Gramene:AT1G10950.1hmmpanther:PTHR10766hmmpanther:PTHR10766:SF52
HOGENOM:HOG000216680InParanoid:Q940G0InterPro:IPR004240KEGG:ath:AT1G10950
KO:K17087OMA:MVEDLYTPANTHER:PTHR10766PaxDb:Q940G0
Pfam:PF02990Pfam:Q940G0PhylomeDB:Q940G0PIR:D86243
PRIDE:Q940G0PRO:PR:Q940G0ProteinModelPortal:Q940G0Proteomes:UP000006548
RefSeq:NP_563881.1STRING:3702.AT1G10950.1TAIR:AT1G10950tair10-symbols:AtTMN1
tair10-symbols:TMN1TCDB:8.A.68.1.7TMHMM:TMhelixUniGene:At.16751
UniProt:Q940G0
Coordinates (TAIR10) chr1:+:3659322..3663622
Molecular Weight (calculated) 66896.60 Da
IEP (calculated) 7.71
GRAVY (calculated) 0.37
Length 589 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSSSSAAVL VFLLLVSLLT PTFASDSDHK YQAEEQVTLW VNKVGPYNNP QETYNYYSLP FCRPSGNNVH KWGGLGEVLG GNELIDSEIA IKFMKNVERS
101: VICPLELDEA KVKHFKDAIE SSYWFEFFMD DLPLWGFVGE LHPDKNSENG KHVLYTHKNI VVKYNKDQII HVNLTQDNPR PLEAGKKMDL TYSVQWIPTN
201: VTFARRFDVY LDYPFFEHQI HWFSIFNSFM MVIFLTGLVS MILMRTLRND YAKYAREDDD LESLERDVSE ESGWKLVHGD VFRPASSLVL LSAVVGTGAQ
301: LALLVLLVIL MAIVGTLYVG RGAIVTTFIV CYALTSFVSG YVSGGMYSRS GGKHWIKCMV LTASLFPFLC FGIGFLLNTI AIFYGSLAAI PFGTMVVVFV
401: IWGFISFPLA LLGTVVGRNW SGAPNNPCRV KTIPRPIPEK KWYLTPSVVS LMGGLLPFGS IFIEMYFVFT SFWNYKVYYV YGFMLLVFVI LVIVTVCVTI
501: VGTYFLLNAE NYHWQWTSFF SAASTAVYVY LYSIYYYYVK TKMSGFFQTS FYFGYTMMFC LGLGILCGAV GYLGSNLFVR RIYRNIKCD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)