AT1G10910.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 2 (TAIR:AT1G74850.1); Has 41177 Blast hits to 13618 proteins in 293 species: Archae - 1; Bacteria - 42; Metazoa - 324; Fungi - 460; Plants - 39061; Viruses - 0; Other Eukaryotes - 1289 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:3639908..3643974 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75103.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.30 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||
| Length | 664 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METPLLVGLE LRCPPHLFNT HSRPSSSLSI PALSLRILTP TAATTSSAVI ELPANVAEAP RSKRHSNSYL ARKSAISEVQ RSSDFLSSLQ RLATVLKVQD 101: LNVILRDFGI SGRWQDLIQL FEWMQQHGKI SVSTYSSCIK FVGAKNVSKA LEIYQSIPDE STKINVYICN SILSCLVKNG KLDSCIKLFD QMKRDGLKPD 201: VVTYNTLLAG CIKVKNGYPK AIELIGELPH NGIQMDSVMY GTVLAICASN GRSEEAENFI QQMKVEGHSP NIYHYSSLLN SYSWKGDYKK ADELMTEMKS 301: IGLVPNKVMM TTLLKVYIKG GLFDRSRELL SELESAGYAE NEMPYCMLMD GLSKAGKLEE ARSIFDDMKG KGVRSDGYAN SIMISALCRS KRFKEAKELS 401: RDSETTYEKC DLVMLNTMLC AYCRAGEMES VMRMMKKMDE QAVSPDYNTF HILIKYFIKE KLHLLAYQTT LDMHSKGHRL EEELCSSLIY HLGKIRAQAE 501: AFSVYNMLRY SKRTICKELH EKILHILIQG NLLKDAYIVV KDNAKMISQP TLKKFGRAFM ISGNINLVND VLKVLHGSGH KIDQVQFEIA ISRYISQPDK 601: KELLLQLLQW MPGQGYVVDS STRNLILKNS HMFGRLLIAE ILSKHHVASR PMIKSRPEQK FRCK |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)