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AT1G10780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G67190.2); Has 253 Blast hits to 253 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:22861eggNOG:ENOG410IPP3eggNOG:ENOG410ZT2WEMBL:AC007354EMBL:AC009398EMBL:BT015078EMBL:BT015897
EMBL:CP002684EnsemblPlants:AT1G10780EnsemblPlants:AT1G10780.1entrez:837621Gene3D:3.80.10.10GeneID:837621Genevisible:Q9SAC4
GO:GO:0009506Gramene:AT1G10780.1hmmpanther:PTHR32212hmmpanther:PTHR32212:SF82HOGENOM:HOG000084629InParanoid:Q9SAC4InterPro:IPR001810
InterPro:IPR032675KEGG:ath:AT1G10780OMA:GVQWCWDPaxDb:Q9SAC4Pfam:PF12937Pfam:Q9SAC4Pfscan:PS50181
PhylomeDB:Q9SAC4PIR:D86241PRIDE:Q9SAC4PRO:PR:Q9SAC4PROSITE:PS50181ProteinModelPortal:Q9SAC4Proteomes:UP000006548
RefSeq:NP_172548.2SMART:SM00256STRING:3702.AT1G10780.1SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT1G10780UniGene:At.49872
UniProt:Q9SAC4
Coordinates (TAIR10) chr1:-:3592875..3594310
Molecular Weight (calculated) 47405.80 Da
IEP (calculated) 6.57
GRAVY (calculated) 0.02
Length 418 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSLPDAILQ YILSYLTSAR DVAACNCVSK RWKESTDSVK SVVFHRNSFE SIMETDDSDS IVRKMISSSR RLEELVVYSP FTSSGLASWM MHVSSSLRLL
101: ELRMDNLASE EVVVEGPLKL DCIGVAKNLE ILKLWGVLMM SPPKWDMFPN LRSLEIVGAK MDDSSLSHAL RACPNLSNLL LLACEGVKSI SIDLPYLEHC
201: KLDFYGQGNT LLVLTSQRLV SLDVQGCSWI RVPETKFLKN LSISSVTGRV YMVDFNNLSS LEALSIRGVQ WCWDAICMIL QQARDVKHLF MKVEFTGNEA
301: LQPFPEIDFV EFFNNHPKLQ TFDIHGAMFA ALCQKNSLKK LETGFTIPCL EEVVITVRSP LNAEQKMNTL ESLVKYARGL KRMVIRILRM KSNHSSADDF
401: CDDICKFRHM NEHLVHIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)