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AT1G10750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.924
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of Unknown Function (DUF239)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of Unknown Function (DUF239); INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 789 Blast hits to 744 proteins in 31 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 764; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHECeggNOG:ENOG4111S54EMBL:BT004201EMBL:BT006137EMBL:CP002684EnsemblPlants:AT1G10750EnsemblPlants:AT1G10750.1
entrez:837618GeneID:837618GO:GO:0016021Gramene:AT1G10750.1hmmpanther:PTHR31589hmmpanther:PTHR31589:SF19HOGENOM:HOG000237949
InterPro:IPR004314InterPro:IPR025521KEGG:ath:AT1G10750OMA:SFFLDMIPfam:PF03080Pfam:PF14365PhylomeDB:Q84JS7
Proteomes:UP000006548RefSeq:NP_172545.1TAIR:AT1G10750TMHMM:TMhelixUniGene:At.42167UniGene:At.69511UniProt:Q84JS7
Coordinates (TAIR10) chr1:-:3574986..3578310
Molecular Weight (calculated) 53131.80 Da
IEP (calculated) 9.33
GRAVY (calculated) -0.55
Length 467 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGVFVLRKP RNGNKCRRFD RCITMRQTET ELFSEETRMR TRETRRRRRS FFLDMILLFR TCSSNILFLS LLLLSSSFSS VLSENLSPRN QTLRPLDELN
101: KLKAINQHLR KINKPSIKTI HSPDGDIIDC VLLHHQPAFD HPSLRGQKPL DPPERPRGHN RRGLRPKSFQ LWGMEGETCP EGTVPIRRTK EEDILRANSV
201: SSFGKKLRHY RRDTSSNGHE HAVGYVSGEK YYGAKASINV WAPQVQNQYE FSLSQIWIIS GSFGNDLNTI EAGWQVSPEL YGDNYPRFFT YWTNDAYQAT
301: GCYNLLCSGF VQTNSEIAIG AAISPSSSYK GGQFDITLLI WKDPKHGNWW LEFGSGILVG YWPSFLFTHL KEHASMVQYG GEIVNSSPFG AHTSTQMGSG
401: HFAEEGFTKS SYFRNIQVVD WDNNLVPSPN LRVLADHPNC YDIQGGSNRA WGSYFYYGGP GKNPKCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)