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AT1G10730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.348
cytosol 0.313
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Clathrin adaptor complexes medium subunit family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Clathrin adaptor complexes medium subunit family protein; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G60780.1); Has 2200 Blast hits to 2139 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 504; Plants - 215; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink).
Protein Annotations
BioGrid:22856eggNOG:ENOG410XPFSeggNOG:KOG0937EMBL:AC007354
EMBL:AC009398EMBL:CP002684EnsemblPlants:AT1G10730EnsemblPlants:AT1G10730.1
entrez:837616GeneID:837616Genevisible:Q9SAC9GO:GO:0005794
GO:GO:0006886GO:GO:0016192GO:GO:0030131GO:GO:0030665
Gramene:AT1G10730.1hmmpanther:PTHR10529HOGENOM:HOG000173247InParanoid:Q9SAC9
InterPro:IPR001392InterPro:IPR011012InterPro:IPR018240InterPro:IPR022775
InterPro:IPR028565KEGG:ath:AT1G10730KO:K12393PaxDb:Q9SAC9
Pfam:PF00928Pfam:PF01217Pfam:Q9SAC9Pfscan:PS51072
PhylomeDB:Q9SAC9PIR:G86240PIRSF:PIRSF005992PRIDE:Q9SAC9
PRINTS:PR00314PRO:PR:Q9SAC9PROSITE:PS00991PROSITE:PS51072
ProteinModelPortal:Q9SAC9Proteomes:UP000006548RefSeq:NP_172543.1scanprosite:PS00991
SMR:Q9SAC9STRING:3702.AT1G10730.1SUPFAM:0038852SUPFAM:SSF49447
SUPFAM:SSF64356TAIR:AT1G10730UniGene:At.51559UniProt:Q9SAC9
Coordinates (TAIR10) chr1:+:3565463..3567779
Molecular Weight (calculated) 49227.20 Da
IEP (calculated) 6.62
GRAVY (calculated) -0.22
Length 428 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGAASALFL LDIKGRVLVW RDYRGDVTAA QAERFFTKLI ETEGDSQSND PVAYDNGVTY MFVQHSNIYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQFTE ARILSEFIKT DAYRMEVTQR PPMAVTNSVS WRSEGLKFKK NEVFLDVIES VNILVNSNGQ IVRSDVVGAL
201: KMRTYLSGMP ECKLGLNDRI LLEAQGRAIK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGSFDLMTY RLSTQVKPLI WVEAHIERHS RSRVEMLVKA
301: RSQFKDRSYA TSVEIELPVP TDAYNPDVRT SLGSAAYAPE KDALVWKIQY FYGNKEHTLK ADFHLPSIAA EEATPERKAP IRVKFEIPKF IVSGIQVRYL
401: KIIEKSGYQA HPWVRYITMA GEYELRLM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)