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AT1G10680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.911
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : P-glycoprotein 10
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-glycoprotein 10 (PGP10); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 2 (TAIR:AT4G25960.1); Has 851951 Blast hits to 394154 proteins in 4179 species: Archae - 14690; Bacteria - 665527; Metazoa - 18433; Fungi - 12853; Plants - 9433; Viruses - 32; Other Eukaryotes - 130983 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G10680-MONOMEReggNOG:COG1132eggNOG:KOG0055EMBL:AC009398
EMBL:CP002684EnsemblPlants:AT1G10680EnsemblPlants:AT1G10680.1entrez:837611
Gene3D:3.40.50.300GeneID:837611Genevisible:Q9SGY1GO:GO:0005524
GO:GO:0005739GO:GO:0016021GO:GO:0042626GO:GO:0055085
Gramene:AT1G10680.1hmmpanther:PTHR24221InParanoid:Q9SGY1InterPro:IPR003439
InterPro:IPR003593InterPro:IPR011527InterPro:IPR017871InterPro:IPR027417
KEGG:ath:AT1G10680KO:K05658OMA:HISEKIFPaxDb:Q9SGY1
Pfam:PF00005Pfam:PF00664Pfam:Q9SGY1Pfscan:PS50893
Pfscan:PS50929PhylomeDB:Q9SGY1PIR:B86240PRIDE:Q9SGY1
PRO:PR:Q9SGY1PROSITE:PS00211PROSITE:PS50893PROSITE:PS50929
ProteinModelPortal:Q9SGY1Proteomes:UP000006548RefSeq:NP_172538.1scanprosite:PS00211
SMART:SM00382SMR:Q9SGY1STRING:3702.AT1G10680.1SUPFAM:SSF52540
SUPFAM:SSF90123TAIR:AT1G10680tair10-symbols:PGP10TMHMM:TMhelix
UniGene:At.51557UniProt:Q9SGY1
Coordinates (TAIR10) chr1:-:3538470..3543782
Molecular Weight (calculated) 134482.00 Da
IEP (calculated) 7.22
GRAVY (calculated) 0.19
Length 1227 amino acids
Sequence (TAIR10)
(BLAST)
0001: MQPSNDPAIV DMAAAEKEKK RPSVSFLKLF SFADFYDCVL MALGSIGACI HGASVPVFFI FFGKLINIIG LAYLFPQEAS HKVAKYSLDF VYLSVVILFS
0101: SWLEVACWMH TGERQAAKIR KAYLRSMLSQ DISLFDTEIS TGEVISAITS EILVVQDAIS EKVGNFMHFI SRFIAGFAIG FASVWQISLV TLSIVPFIAL
0201: AGGIYAFVSS GLIVRVRKSY VKANEIAEEV IGNVRTVQAF TGEEKAVSSY QGALRNTYNY GRKAGLAKGL GLGSLHFVLF LSWALLIWFT SIVVHKGIAN
0301: GGESFTTMLN VVIAGLSLGQ AAPDISTFMR ASAAAYPIFQ MIERNTEDKT GRKLGNVNGD ILFKDVTFTY PSRPDVVIFD KLNFVIPAGK VVALVGGSGS
0401: GKSTMISLIE RFYEPTDGAV MLDGNDIRYL DLKWLRGHIG LVNQEPVLFA TTIRENIMYG KDDATSEEIT NAAKLSEAIS FINNLPEGFE TQVGERGIQL
0501: SGGQKQRISI SRAIVKNPSI LLLDEATSAL DAESEKIVQE ALDRVMVGRT TVVVAHRLST VRNADIIAVV GGGKIIESGS HDELISNPDG AYSSLLRIQE
0601: AASPNLNHTP SLPVSTKPLP ELPITETTSS IHQSVNQPDT TKQAKVTVGR LYSMIRPDWK YGLCGTLGSF IAGSQMPLFA LGIAQALVSY YMDWETTQNE
0701: VKRISILFCC GSVITVIVHT IEHTTFGIMG ERLTLRVRQK MFSAILRNEI GWFDKVDNTS SMLASRLESD ATLLRTIVVD RSTILLENLG LVVTAFIISF
0801: ILNWRLTLVV LATYPLIISG HISEKIFMQG YGGNLSKAYL KANMLAGESI SNIRTVVAFC AEEKVLDLYS KELLEPSERS FRRGQMAGIL YGVSQFFIFS
0901: SYGLALWYGS ILMEKGLSSF ESVMKTFMVL IVTALVMGEV LALAPDLLKG NQMVVSVFEL LDRRTQVVGD TGEELSNVEG TIELKGVHFS YPSRPDVTIF
1001: SDFNLLVPSG KSMALVGQSG SGKSSVLSLV LRFYDPTAGI IMIDGQDIKK LKLKSLRRHI GLVQQEPALF ATTIYENILY GKEGASESEV MEAAKLANAH
1101: SFISSLPEGY STKVGERGIQ MSGGQRQRIA IARAVLKNPE ILLLDEATSA LDVESERVVQ QALDRLMRDR TTVVVAHRLS TIKNSDMISV IQDGKIIEQG
1201: SHNILVENKN GPYSKLISLQ QRQRHHP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)