AT1G10650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SBP (S-ribonuclease binding protein) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G60610.3); Has 1212 Blast hits to 1212 proteins in 167 species: Archae - 0; Bacteria - 2; Metazoa - 524; Fungi - 0; Plants - 416; Viruses - 105; Other Eukaryotes - 165 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3524122..3525318 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38251.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.96 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||
| Length | 339 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSGNNGNTA PPVFMNENQL QYQTNLRSNQ LHLLGNMGGG CTVDPVNYFA NDNLVPMIRP NKRGREAESI SNNIQRQQQK LQMSLNYNYN NTSVREEVPK 101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND 201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV 301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)