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AT1G10630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ADP-ribosylation factor A1F
Curator
Summary (TAIR10)
A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.
Computational
Description (TAIR10)
ADP-ribosylation factor A1F (ARFA1F); FUNCTIONS IN: phospholipase activator activity, GTP binding, copper ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT2G47170.1); Has 15022 Blast hits to 15003 proteins in 509 species: Archae - 14; Bacteria - 51; Metazoa - 7710; Fungi - 1942; Plants - 2027; Viruses - 3; Other Eukaryotes - 3275 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1100eggNOG:KOG0070EMBL:AK226308EMBL:BT014776EMBL:BT015004EMBL:CP002684EnsemblPlants:AT1G10630
EnsemblPlants:AT1G10630.1entrez:837606Gene3D:3.40.50.300GeneID:837606GO:GO:0005507GO:GO:0005525GO:GO:0005774
GO:GO:0005794GO:GO:0005829GO:GO:0005886GO:GO:0007264GO:GO:0016004GO:GO:0016020GO:GO:0043085
Gramene:AT1G10630.1hmmpanther:PTHR11711hmmpanther:PTHR11711:SF181IntAct:Q6ID97InterPro:IPR005225InterPro:IPR006689InterPro:IPR024156
InterPro:IPR027417KEGG:ath:AT1G10630KO:K07937OMA:HYFANTQPfam:PF00025Pfscan:PS51417PhylomeDB:Q6ID97
PRINTS:PR00328PROSITE:PS51417Proteomes:UP000006548Reactome:R-ATH-1660514Reactome:R-ATH-199997Reactome:R-ATH-421837RefSeq:NP_172533.2
SMR:Q6ID97STRING:3702.AT1G10630.1SUPFAM:SSF52540TAIR:AT1G10630tair10-symbols:ARFA1Ftair10-symbols:ATARFA1FTIGRfam:TIGR00231
TIGRFAMs:TIGR00231UniGene:At.21181UniProt:Q6ID97
Coordinates (TAIR10) chr1:-:3513189..3514230
Molecular Weight (calculated) 20623.80 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.19
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)