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AT1G10560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.516
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant U-box 18
Curator
Summary (TAIR10)
Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
Computational
Description (TAIR10)
plant U-box 18 (PUB18); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G60190.1); Has 3089 Blast hits to 2773 proteins in 228 species: Archae - 0; Bacteria - 22; Metazoa - 252; Fungi - 338; Plants - 2172; Viruses - 3; Other Eukaryotes - 302 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410ITM9eggNOG:ENOG410YCUSEMBL:AC007067
EMBL:AY075683EMBL:CP002684EnsemblPlants:AT1G10560EnsemblPlants:AT1G10560.1
entrez:837597Gene3D:1.25.10.10Gene3D:3.30.40.10GeneID:837597
Genevisible:Q9XIJ5GO:GO:0004842GO:GO:0008270GO:GO:0010029
GO:GO:0016567GO:GO:0016874Gramene:AT1G10560.1hmmpanther:PTHR23315
hmmpanther:PTHR23315:SF116HOGENOM:HOG000238412InParanoid:Q9XIJ5InterPro:IPR000225
InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083InterPro:IPR016024
iPTMnet:Q9XIJ5KEGG:ath:AT1G10560OMA:VIETGHTPaxDb:Q9XIJ5
Pfam:PF00514Pfam:PF04564Pfam:Q9XIJ5Pfscan:PS50176
Pfscan:PS51698PhylomeDB:Q9XIJ5PIR:B86239PRIDE:Q9XIJ5
PRO:PR:Q9XIJ5PROSITE:PS50176PROSITE:PS51698ProteinModelPortal:Q9XIJ5
Proteomes:UP000006548RefSeq:NP_172526.1SMART:SM00185SMART:SM00504
SMR:Q9XIJ5STRING:3702.AT1G10560.1SUPFAM:SSF48371SUPFAM:SSF57850
TAIR:AT1G10560tair10-symbols:ATPUB18tair10-symbols:PUB18UniGene:At.14982
UniPathway:UPA00143UniProt:Q9XIJ5
Coordinates (TAIR10) chr1:+:3484613..3486706
Molecular Weight (calculated) 76999.70 Da
IEP (calculated) 8.88
GRAVY (calculated) -0.07
Length 697 amino acids
Sequence (TAIR10)
(BLAST)
001: MIHTKTGSGR RILTFPTVEP SESISIVTLL DSLIQLAGDI LTFKSKHFST NKQSFRETLR RIQNLLVVFE EIRIRIRNSR RYFHDSAAAS SLKEIHVGFQ
101: KLKFLLEDCT RDGARLCMMM NSDQVSDHLR VLTRSISTSL SAFPVASVDL TTEVNELIDL VVRQARKYGV QPETNDKRAV SSINRILALF VNRVVPDPDE
201: INRILDHVGI RKWGDCVKEI NFLGEEIDAE RLDEKKKKSS DQVELLSSLM GFICYCRCII LGRIERDDHH NHHEDGIKKD HDLIRGLKVE DLLCPISLEI
301: MTDPVVIETG HTYDRSSITK WFGSGNITCP ITGKILTSTE LVDNVSVRQV IRKHCKTNGI VLAGISRRRK SHDDVVPESL AAKGAGKLIA KFLTSELING
401: GEEMIYRAVR EIRVQTKTSS FNRSCLVKAG AVTPLLKLLS SVDIRIQENA MAGILNLSKH VTGKSKIAGE GLKILVEILN EGAKTETRLY SASALFYLSS
501: VEDYSRLIGE NPDAIPGLMN IVKGDDYGDS AKRSALLAVM GLLMQSDNHW RVLAAGAVPI LLDLLRSGEI SGGLTADCLA TLAKLAEYPD GTIGVIRRGG
601: LKLAVKILSS SEDSPVAVKQ HCVGLILNLC LNGGRDVVGV LVKNSLVMGS LYTVLSNGEY GGSKKASALI RMIHEFQERK TGSVEPNLQR GRFVHAW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)