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AT1G10500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chloroplast-localized ISCA-like protein
Curator
Summary (TAIR10)
Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues.
Computational
Description (TAIR10)
chloroplast-localized ISCA-like protein (CPISCA); CONTAINS InterPro DOMAIN/s: FeS cluster insertion, C-terminal, conserved site (InterPro:IPR017870), FeS cluster biogenesis (InterPro:IPR000361), FeS cluster insertion (InterPro:IPR016092); BEST Arabidopsis thaliana protein match is: Iron-sulphur cluster biosynthesis family protein (TAIR:AT5G03905.1); Has 10385 Blast hits to 10384 proteins in 1842 species: Archae - 43; Bacteria - 5944; Metazoa - 237; Fungi - 240; Plants - 172; Viruses - 0; Other Eukaryotes - 3749 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0316eggNOG:KOG1120EMBL:AC007067EMBL:AY971959
EMBL:BT010894EMBL:BT011763EMBL:CP002684EnsemblPlants:AT1G10500
EnsemblPlants:AT1G10500.1entrez:837590ExpressionAtlas:Q9XIK3Gene3D:2.60.300.12
GeneID:837590Genevisible:Q9XIK3GO:GO:0005198GO:GO:0005759
GO:GO:0006790GO:GO:0008198GO:GO:0009570GO:GO:0016226
GO:GO:0051537GO:GO:0051539GO:GO:0097428Gramene:AT1G10500.1
hmmpanther:PTHR10072hmmpanther:PTHR10072:SF48HOGENOM:HOG000228314InParanoid:Q9XIK3
InterPro:IPR000361InterPro:IPR016092InterPro:IPR017870InterPro:IPR031108
KEGG:ath:AT1G10500KO:K13628OMA:PKSMLFLPANTHER:PTHR10072:SF48
PaxDb:Q9XIK3Pfam:PF01521Pfam:Q9XIK3PhylomeDB:Q9XIK3
PIR:F86238PRIDE:Q9XIK3PRO:PR:Q9XIK3PROSITE:PS01152
ProteinModelPortal:Q9XIK3Proteomes:UP000006548RefSeq:NP_172520.1scanprosite:PS01152
SMR:Q9XIK3STRING:3702.AT1G10500.1SUPFAM:SSF89360TAIR:AT1G10500
tair10-symbols:ATCPISCAtair10-symbols:CPISCATIGRfam:TIGR00049TIGRFAMs:TIGR00049
UniGene:At.23708UniGene:At.66809UniProt:B9DF88UniProt:Q9XIK3
Coordinates (TAIR10) chr1:-:3460160..3461340
Molecular Weight (calculated) 19338.10 Da
IEP (calculated) 8.37
GRAVY (calculated) -0.10
Length 180 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFATGITTS SNPTFLGLKI SNTSLRSVVS CNSISFPSLS YVNLNLNRRN RLSVRSASVP AAPAMEGLKP AISLSENALK HLSKMRSERG EDLCLRIGVK
101: QGGCSGMSYT MDFENRANAR PDDSTIEYQG FTIVCDPKSM LFLFGMQLDY SDALIGGGFS FSNPNATQTC GCGKSFAAEM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)