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AT1G10480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : zinc finger protein 5
Curator
Summary (TAIR10)
Encodes a zinc finger protein containing only a single zinc finger.
Computational
Description (TAIR10)
zinc finger protein 5 (ZFP5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 6 (TAIR:AT1G67030.1); Has 905 Blast hits to 903 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 900; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:22828eggNOG:ENOG410J27NeggNOG:ENOG4111AXQEMBL:AB493446
EMBL:AC007067EMBL:AY086302EMBL:BT024840EMBL:CP002684
EMBL:L39648EnsemblPlants:AT1G10480EnsemblPlants:AT1G10480.1entrez:837588
Gene3D:3.30.160.60GeneID:837588Genevisible:Q39264GO:GO:0003700
GO:GO:0006351GO:GO:0006355GO:GO:0007275GO:GO:0009736
GO:GO:0009740GO:GO:0010026GO:GO:0044212GO:GO:0046872
GO:GO:0048510Gramene:AT1G10480.1HOGENOM:HOG000126883InParanoid:Q39264
InterPro:IPR007087InterPro:IPR013087KEGG:ath:AT1G10480MINT:MINT-8067428
OMA:CQDLNEQPaxDb:Q39264Pfam:PF13912Pfam:Q39264
Pfscan:PS50157PhylomeDB:Q39264PIR:S55885PRIDE:Q39264
PRO:PR:Q39264PROSITE:PS00028PROSITE:PS50157ProteinModelPortal:Q39264
Proteomes:UP000006548RefSeq:NP_172518.1scanprosite:PS00028SMR:Q39264
STRING:3702.AT1G10480.1SUPFAM:SSF57667TAIR:AT1G10480tair10-symbols:ZFP5
UniGene:At.1643UniProt:Q39264
Coordinates (TAIR10) chr1:+:3449734..3450369
Molecular Weight (calculated) 23591.50 Da
IEP (calculated) 9.15
GRAVY (calculated) -0.81
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MSINPTMSRT GESSSGSSSD KTIKLFGFEL ISGSRTPEIT TAESVSSSTN TTSLTVMKRH ECQYCGKEFA NSQALGGHQN AHKKERLKKK RLQLQARRAS
101: IGYYLTNHQQ PITTSFQRQY KTPSYCAFSS MHVNNDQMGV YNEDWSSRSS QINFGNNDTC QDLNEQSGEM GKLYGVRPNM IQFQRDLSSR SDQMRSINSL
201: DLHLGFAGDA A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)