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AT1G10390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleoporin autopeptidase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleoporin autopeptidase; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G59660.1); Has 77624 Blast hits to 32376 proteins in 1819 species: Archae - 124; Bacteria - 21147; Metazoa - 21029; Fungi - 13994; Plants - 4522; Viruses - 746; Other Eukaryotes - 16062 (source: NCBI BLink).
Protein Annotations
BioGrid:22819eggNOG:ENOG410XPV4eggNOG:KOG0845EMBL:AC005489EMBL:AK226964EMBL:AY078948EMBL:BT003030
EMBL:CP002684EnsemblPlants:AT1G10390EnsemblPlants:AT1G10390.1EnsemblPlants:AT1G10390.2entrez:837579Gene3D:3.30.1610.10GeneID:837579
Genevisible:Q8RY25GO:GO:0005635GO:GO:0005643GO:GO:0015031GO:GO:0051028Gramene:AT1G10390.1Gramene:AT1G10390.2
hmmpanther:PTHR23198hmmpanther:PTHR23198:SF4HOGENOM:HOG000085153InParanoid:Q8RY25InterPro:IPR007230iPTMnet:Q8RY25KEGG:ath:AT1G10390
KO:K14297MEROPS:S59.A02OMA:RQYTEGPPaxDb:Q8RY25Pfam:PF04096Pfam:Q8RY25Pfscan:PS51434
PhylomeDB:Q8RY25PIR:H86237PRIDE:Q8RY25PRO:PR:Q8RY25PROSITE:PS51434ProteinModelPortal:Q8RY25Proteomes:UP000006548
RefSeq:NP_001031018.1RefSeq:NP_172510.2SMR:Q8RY25STRING:3702.AT1G10390.1SUPFAM:0040175SUPFAM:SSF82215TAIR:AT1G10390
UniGene:At.27877UniProt:Q8RY25
Coordinates (TAIR10) chr1:-:3407265..3412045
Molecular Weight (calculated) 106313.00 Da
IEP (calculated) 9.22
GRAVY (calculated) -0.45
Length 1041 amino acids
Sequence (TAIR10)
(BLAST)
0001: MFGSSNPFGQ SSGTSPFGSQ SLFGQTSNTS SNNPFAPATP FGTSAPFAAQ SGSSIFGSTS TGVFGAPQTS SPFASTPTFG ASSSPAFGNS TPAFGASPAS
0101: SPFGGSSGFG QKPLGFSTPQ SNPFGNSTQQ SQPAFGNTSF GSSTPFGATN TPAFGAPSTP SFGATSTPSF GASSTPAFGA TNTPAFGASN SPSFGATNTP
0201: AFGASPTPAF GSTGTTFGNT GFGSGGAFGA SNTPAFGASG TPAFGASGTP AFGASSTPAF GASSTPAFGA SSTPAFGGSS TPSFGASNTS SFSFGSSPAF
0301: GQSTSAFGSS AFGSTPSPFG GAQASTPTFG GSGFGQSTFG GQQGGSRAVP YAPTVEADTG TGTQPAGKLE SISAMPAYKE KNYEELRWED YQRGDKGGPL
0401: PAGQSPGNAG FGISPSQPNP FSPSPAFGQT SANPTNPFSS STSTNPFAPQ TPTIASSSFG TATSNFGSSP FGVTSSSNLF GSGSSTTTSV FGSSSAFGTT
0501: TPSPLFGSSS TPGFGSSSSI FGSAPGQGAT PAFGNSQPST LFNSTPSTGQ TGSAFGQTGS AFGQFGQSSA PAFGQNSIFN KPSTGFGNMF SSSSTLTTSS
0601: SSPFGQTMPA GVTPFQSAQP GQASNGFGFN NFGQNQAANT TGNAGGLGIF GQGNFGQSPA PLNSVVLQPV AVTNPFGTLP AMPQISINQG GNSPSIQYGI
0701: SSMPVVDKPA PVRISSLLTS RHLLHRRVRL PARKYRPGEN GPKVPFFTDD EESSSTPKAD ALFIPRENPR ALVIRPVQQW SSRDKSILPK EQRPTAPLHD
0801: NGKSPDMATD AANHDRNGNG ELGATGERIH TSVNANQKPN GTTRSDQASE KERPYKTLSG HRAGEAAIVY EHGADIEALM PKLRQSDYFT EPRIQELAAK
0901: ERADPGYCRR VRDFVVGRHG YGSIKFMGET DVRRLDLESL VQFNTREVIV YMDESKKPAV GQGLNKPAEV TLLNIKCIDK KTGKQFTEGE RVEKYKMMLK
1001: KKAEAQGAEF VSFDPVKGEW KFRVEHFSSY KLGDEDEEDG V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)