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AT1G10380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Putative membrane lipoprotein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Putative membrane lipoprotein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 280 Blast hits to 279 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVNQeggNOG:ENOG410YCIXEMBL:AK175576EMBL:AY057677EMBL:AY085550EMBL:AY116950EMBL:CP002684
EnsemblPlants:AT1G10380EnsemblPlants:AT1G10380.1entrez:837577GeneID:837577GO:GO:0030247Gramene:AT1G10380.1hmmpanther:PTHR33355
hmmpanther:PTHR33355:SF2InterPro:IPR025287InterPro:IPR032872KEGG:ath:AT1G10380OMA:SMSTCACPfam:PF13947Pfam:PF14380
Pfscan:PS51257PhylomeDB:Q93ZB0Proteomes:UP000006548RefSeq:NP_563868.1STRING:3702.AT1G10380.1TAIR:AT1G10380UniGene:At.11291
UniProt:Q93ZB0
Coordinates (TAIR10) chr1:+:3400706..3402110
Molecular Weight (calculated) 33952.00 Da
IEP (calculated) 5.24
GRAVY (calculated) -0.00
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLKRSSSSF FIFLFSFFFL SSHVSSQACQ KTCGQIPIKY PLGTGSGCGD PRFTRYITCD PDQQTLTLTT HTGSYPITSV DYAKQEIYVT DPSMSTCACT
101: RPSHGFGLDW DAPFSFHDDT VFTLLDCSVD ESPVFTPLSN GSGRVSLCDR QSSSICTFLY SNCRAISLIN LQVSTCCVYV PLDLGPSFEM DLNKLKCSSY
201: SGFYNLGPGQ ESHPENWNYG IALKYKFNVF DEYPGVCGSC ERSNGACGFN TQSSSFVCNC PGGINTTSDC FFLYNSASIL VPWFSREWVM YPLSWFVVWM
301: VMVLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)