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AT1G10340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.458
plasma membrane 0.283
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT2G24600.4); Has 23228 Blast hits to 12811 proteins in 577 species: Archae - 31; Bacteria - 1612; Metazoa - 12827; Fungi - 1604; Plants - 2793; Viruses - 138; Other Eukaryotes - 4223 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0666eggNOG:KOG0504EMBL:AC005489EMBL:AF372975EMBL:AY081719EMBL:CP002684EnsemblPlants:AT1G10340
EnsemblPlants:AT1G10340.1entrez:837573ExpressionAtlas:Q9SY76Gene3D:1.25.40.20GeneID:837573GO:GO:0016021Gramene:AT1G10340.1
hmmpanther:PTHR24177hmmpanther:PTHR24177:SF18HOGENOM:HOG000131723InterPro:IPR002110InterPro:IPR020683InterPro:IPR026961KEGG:ath:AT1G10340
OMA:NNESKSHPfam:PF12796Pfam:PF13962Pfscan:PS50088Pfscan:PS50297PhylomeDB:Q9SY76PROSITE:PS50088
PROSITE:PS50297Proteomes:UP000006548RefSeq:NP_563867.1SMART:SM00248SMR:Q9SY76STRING:3702.AT1G10340.1SUPFAM:SSF48403
TAIR:AT1G10340TMHMM:TMhelixUniGene:At.11286UniProt:Q9SY76
Coordinates (TAIR10) chr1:-:3390475..3392481
Molecular Weight (calculated) 63926.20 Da
IEP (calculated) 6.24
GRAVY (calculated) 0.06
Length 578 amino acids
Sequence (TAIR10)
(BLAST)
001: MQPIFHAILK NDLPAFLELV EDSESSLEER NEEEHLNNTV LHMAAKFGHR ELVSKIIELR PSLVSSRNAY RNTPLHLAAI LGDVNIVMQM LETGLEVCSA
101: RNINNHTPLH LACRSNSIEA ARLIAEKTQS IGLGELILAI SSGSTSIVGT ILERFPDLAR EEAWVVEDGS QSTLLHHACD KGDFELTTIL LGLDQGLEEA
201: LNPNGLSPLH LAVLRGSVVI LEEFLDKVPL SFSSITPSKE TVFHLAARNK NMDAFVFMAE SLGINSQILL QQTDESGNTV LHIAASVSFD APLIRYIVGK
301: NIVDITSKNK MGFEAFQLLP REAQDFELLS RWLRFGTETS QELDSENNVE QHEGSQEVEV IRLLRIIGIN TSEIAERKRS KEQEVERGRQ NLEYQMHIEA
401: LQNARNTIAI VAVLIASVAY AGGINPPGGV YQDGPWRGKS LVGKTTAFKV FAICNNIALF TSLGIVILLV SIIPYKRKPL KRLLVATHRM MWVSVGFMAT
501: AYIAASWVTI PHYHGTQWLF PAIVAVAGGA LTVLFFYLGV ETIGHWFKKM NRVGDNIPSF ARTSSDLAVS GKSGYFTY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)