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AT1G10330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.628
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 31141 Blast hits to 12595 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 42; Plants - 30558; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC005489EMBL:CP002684
EnsemblPlants:AT1G10330EnsemblPlants:AT1G10330.1entrez:837572Gene3D:1.25.40.10
GeneID:837572Genevisible:Q9SY75Gramene:AT1G10330.1hmmpanther:PTHR24015
HOGENOM:HOG000237569InParanoid:Q9SY75InterPro:IPR002885InterPro:IPR011990
KEGG:ath:AT1G10330OMA:AAFPYNCPaxDb:Q9SY75Pfam:PF01535
Pfam:PF13041Pfam:Q9SY75Pfscan:PS51375PhylomeDB:Q9SY75
PIR:D86237PRIDE:Q9SY75PRO:PR:Q9SY75PROSITE:PS51375
ProteinModelPortal:Q9SY75Proteomes:UP000006548RefSeq:NP_172504.1SMR:Q9SY75
STRING:3702.AT1G10330.1TAIR:AT1G10330TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.51552UniProt:Q9SY75
Coordinates (TAIR10) chr1:+:3388747..3390150
Molecular Weight (calculated) 51433.50 Da
IEP (calculated) 7.82
GRAVY (calculated) 0.16
Length 467 amino acids
Sequence (TAIR10)
(BLAST)
001: MRCTSFSSFS LSLEDALHLL QRFLYSSNQI KQIHTVLLTS NALVASRWKT KCVYNTLIRS YLTTGEYKTS LALFTHMLAS HVQPNNLTFP SLIKAACSSF
101: SVSYGVALHG QALKRGFLWD PFVQTSFVRF YGEVGDLESS RKMFDDILNP CVVACNSLLD ACGRNGEMDY AFEYFQRMPV TDVVSWTTVI NGFSKKGLHA
201: KALMVFGEMI QNERAVITPN EATFVSVLSS CANFDQGGIR LGKQIHGYVM SKEIILTTTL GTALLDMYGK AGDLEMALTI FDQIRDKKVC AWNAIISALA
301: SNGRPKQALE MFEMMKSSYV HPNGITLLAI LTACARSKLV DLGIQLFSSI CSEYKIIPTS EHYGCVVDLI GRAGLLVDAA NFIQSLPFEP DASVLGALLG
401: ACKIHENTEL GNTVGKQLIG LQPQHCGQYV ALSTFNALDS NWSEAEKMRK AMIEAGIRKI PAYSVLT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)