AT1G10300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleolar GTP-binding protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleolar GTP-binding protein; FUNCTIONS IN: GTP binding; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674), NOG, C-terminal (InterPro:IPR012973); BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G50920.1); Has 8833 Blast hits to 8598 proteins in 2008 species: Archae - 347; Bacteria - 5084; Metazoa - 895; Fungi - 393; Plants - 246; Viruses - 2; Other Eukaryotes - 1866 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:3378142..3380226 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78254.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.94 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 687 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTIVSTCCPF GLSNVTKCIN FVQIKEAKTM VKYNFKKITV VPNGKQFVDI VLSRTQRQTP TVVHKGDRIC KLRSFYMRKV KFTESNFNEK LSAIIDEFPR 101: LKEIQPFYED LLHVLYNKDH YKLALGQVNT AKNKISKIAM DYVKLLKHGD SLYRCKCLKV AALGRMCTVM KGIGPSLAYL EQVRQHIARL PSIDPNTRTL 201: LICGCPNVGK SSFMNKVTRA DVAVQPYAFT TKSLFLGHTD YKCLRYQVID TPGLLDREIE DRNIIELCSI TALAHIRAAV LFFLDISGSC GYTIAQQASL 301: FHNIKSVFKN KPLVIVCNKT DLMPMENLSE EDRKLIEEMK DEAMKTEMGA SEEAVILEMS TLTEEGVMSR LLDQRVAAKM KSKKIGDHLN RFHVAMPKSR 401: DDQERLPCIP QVAGEKEKRK TEKDLEDENG GAGVYSASLK KNYILAKEEW KDDIIPEICD CHNVADFVDS DILNRLEELT SEESLRKAEE EEVGFEIEGE 501: ELTEKEKNDL AAIRKKKALL IEESRLKKSN AQNRAAVPRK FDKDKKFTRK RMGRELSSLG LDPSSALNRA RSKSRGRKRE RYDDLSNDAM DVDVNDDEQH 601: KKKKMCLRSK SRSLSRSRSV SRPPHEVVPG EGFKDSSQKI KAIKIGHKSH RKRDKAARRG EADRVIPSLK PKHLFSGKRG NGKNQRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)