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AT1G10290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25462567 (2015): Golgi Golgi apparatus
  • PMID:25462567 (2015): Golgi trans-Golgi network
  • PMID:25462567 (2015): plasma membrane
  • PMID:14750520 (2003): cytosol cell plate
  • PMID:11449048 (2001): Golgi
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15308754 (2004): plasma membrane
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : dynamin-like protein 6
Curator
Summary (TAIR10)
involved in trafficking from the trans-Golgi Network to the central vacuole.
Computational
Description (TAIR10)
dynamin-like protein 6 (ADL6); FUNCTIONS IN: GTPase activity; INVOLVED IN: Golgi to vacuole transport; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Pleckstrin homology-type (InterPro:IPR011993), Dynamin, GTPase region, conserved site (InterPro:IPR019762), Dynamin, GTPase domain (InterPro:IPR001401), GTPase effector domain, GED (InterPro:IPR020850), Dynamin central region (InterPro:IPR000375), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: dynamin-like 3 (TAIR:AT1G59610.1); Has 3284 Blast hits to 3098 proteins in 352 species: Archae - 4; Bacteria - 126; Metazoa - 1435; Fungi - 709; Plants - 704; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G10290-MONOMERBioGrid:22808BRENDA:3.6.5.5EC:3.6.5.5eggNOG:COG0699eggNOG:KOG0446EMBL:AC005489
EMBL:AF180732EMBL:AK221193EMBL:AK228995EMBL:CP002684EnsemblPlants:AT1G10290EnsemblPlants:AT1G10290.1entrez:837568
Gene3D:2.30.29.30Gene3D:3.40.50.300GeneID:837568Genevisible:Q9SE83GO:GO:0000139GO:GO:0003924GO:GO:0005525
GO:GO:0005774GO:GO:0005794GO:GO:0005829GO:GO:0005874GO:GO:0005886GO:GO:0006896GO:GO:0008289
GO:GO:0009506GO:GO:0009524GO:GO:0016020GO:GO:0030136Gramene:AT1G10290.1hmmpanther:PTHR11566hmmpanther:PTHR11566:SF57
HOGENOM:HOG000241772InParanoid:Q9SE83IntAct:Q9SE83InterPro:IPR000375InterPro:IPR001401InterPro:IPR001849InterPro:IPR003130
InterPro:IPR011993InterPro:IPR019762InterPro:IPR020850InterPro:IPR022812InterPro:IPR027417InterPro:IPR030381iPTMnet:Q9SE83
KEGG:ath:AT1G10290KO:K01528MINT:MINT-8067384ncoils:CoilOMA:NANYNDYPANTHER:PTHR11566PaxDb:Q9SE83
Pfam:PF00169Pfam:PF00350Pfam:PF01031Pfam:PF02212Pfam:Q9SE83Pfscan:PS50003Pfscan:PS51388
Pfscan:PS51718PhylomeDB:Q9SE83PIR:B86237PRIDE:Q9SE83PRINTS:PR00195PRO:PR:Q9SE83PROSITE:PS00410
PROSITE:PS50003PROSITE:PS51388PROSITE:PS51718ProteinModelPortal:Q9SE83Proteomes:UP000006548RefSeq:NP_172500.1scanprosite:PS00410
SMART:SM00053SMART:SM00233SMR:Q9SE83STRING:3702.AT1G10290.1SUPFAM:SSF50729SUPFAM:SSF52540TAIR:AT1G10290
tair10-symbols:ADL6tair10-symbols:DRP2AUniGene:At.11881UniProt:Q9SE83
Coordinates (TAIR10) chr1:+:3370774..3377120
Molecular Weight (calculated) 99171.80 Da
IEP (calculated) 9.57
GRAVY (calculated) -0.49
Length 914 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAIDELSQL SDSMKQAASL LADEDPDETS SSKRPATFLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIEL SRESSLSSKA IILQIDNKSQ
101: QVSASALRHS LQDRLSKGAS GKNRDEINLK LRTSTAPPLK LVDLPGLDQR IVDESMIAEY AQHNDAILLV IVPASQASEI SSSRALKIAK EYDPESTRTI
201: GIIGKIDQAA ENSKALAAVQ ALLSNQGPPK TTDIPWVAVI GQSVSIASAQ SGSGENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPSVLSGLQ GKSQIVQDEL ARLGEQLVNS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKQLPL DRHFDLNNVK RVVLEADGYQ
401: PYLISPEKGL RSLIKIVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLSR ATSPQPDGPT AGGSLKSMKD KPSPQDKETP EVSGLKTAGP EGEITAGYLM KKSAKTNGWS RRWFVLNEKT
601: GKLGYTKKQE ERNFRGTITL EECTIEEIPE DEVEKSKSSK DKKANGPDSK GPGLVFKITC KVPYKTVLKA HNALVLKAES VVDKNEWINK LQKVIQARGG
701: QVGSVSMRQS LSEGSLDKMV RKPIDPEEEL RWMSQEVRGY VEAVLNSLAA NVPKAVVLCQ VEKAKEDMLN QLYSSISAIG NERIESLIQE DQNVKRRRER
801: YQKQSSLLSK LTRQLSIHDN RAAAASSYSD NSGTESSPRA SGGSSGDDWM NAFNSAANGP SDSLSKYGSG GHSRRYSDPA QNGDAASPGS GSNRRTTPNR
901: LPPAPPPTGS AYRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)