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AT1G10200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytoskeleton
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24284066 (2014): cytoskeleton actin filament
  • PMID:20817848 (2010): cytoskeleton
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GATA type zinc finger transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
WLIM1; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G39900.1); Has 4354 Blast hits to 2727 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 3462; Fungi - 43; Plants - 506; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).
Protein Annotations
BioGrid:22798eggNOG:COG5069eggNOG:KOG1700EMBL:AC005489EMBL:AF370569EMBL:AY085377EMBL:CP002684
EnsemblPlants:AT1G10200EnsemblPlants:AT1G10200.1entrez:837558Gene3D:2.10.110.10GeneID:837558Genevisible:Q94JX5GO:GO:0005737
GO:GO:0005856GO:GO:0005886GO:GO:0008270GO:GO:0051015GO:GO:0051017Gramene:AT1G10200.1hmmpanther:PTHR24206
hmmpanther:PTHR24206:SF35HOGENOM:HOG000111235InParanoid:Q94JX5IntAct:Q94JX5InterPro:IPR001781KEGG:ath:AT1G10200OMA:VGTREKC
PaxDb:Q94JX5Pfam:PF00412Pfam:Q94JX5Pfscan:PS50023PhylomeDB:Q94JX5PRIDE:Q94JX5PRO:PR:Q94JX5
PROSITE:PS00478PROSITE:PS50023ProteinModelPortal:Q94JX5Proteomes:UP000006548RefSeq:NP_172491.1scanprosite:PS00478SMART:SM00132
SMR:Q94JX5STRING:3702.AT1G10200.1SUPFAM:SSF57716TAIR:AT1G10200tair10-symbols:WLIM1UniGene:At.11276UniProt:Q94JX5
Coordinates (TAIR10) chr1:-:3346677..3347763
Molecular Weight (calculated) 21041.30 Da
IEP (calculated) 9.03
GRAVY (calculated) -0.57
Length 190 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)