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AT1G10180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: exocyst complex component 84B (TAIR:AT5G49830.1); Has 132 Blast hits to 132 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT7UeggNOG:KOG2215EMBL:AC005489EMBL:AY054286EMBL:CP002684EnsemblPlants:AT1G10180EnsemblPlants:AT1G10180.1
entrez:837556GeneID:837556Genevisible:Q9SY60GO:GO:0005623GO:GO:0006887GO:GO:0060321Gramene:AT1G10180.1
hmmpanther:PTHR21426hmmpanther:PTHR21426:SF2HOGENOM:HOG000084443InParanoid:Q9SY60InterPro:IPR016159iPTMnet:Q9SY60KEGG:ath:AT1G10180
KO:K19986OMA:EEYNSANPaxDb:Q9SY60Pfam:Q9SY60PhylomeDB:Q9SY60PRIDE:Q9SY60PRO:PR:Q9SY60
ProteinModelPortal:Q9SY60Proteomes:UP000006548RefSeq:NP_563863.1STRING:3702.AT1G10180.1SUPFAM:SSF74788TAIR:AT1G10180UniGene:At.11274
UniProt:Q9SY60
Coordinates (TAIR10) chr1:-:3338381..3341494
Molecular Weight (calculated) 86687.90 Da
IEP (calculated) 4.24
GRAVY (calculated) -0.19
Length 769 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSEEDDEY PFIESITPQS KIDSVHQSLT EKGIRKLCCE LMDLKDAVEN MCGDMRTKYL AFLRISEEAV EMEHELVELR KHISSQGILV QDLMAGVCRE
101: MDDWNRLPGD VHDAEVEEDP LPNEVTDPKS EFLEKIDLLL AEHKVDEALE AMDAEERSSP DLKGSVEMSS YKSAFMERKA VLEDQLLRIA KQPSICVAEL
201: KHALIGLIRL GKGPSAHQLL LKFYATSLRR RIEAFLPSCL TCPNTFPATL SKLVFSNISV ATKESAAMFG DDDNPAYSNK VVQWAEREVE YLVRLVKENA
301: SPSETASALR AASICLQDCL NYCKVLEPQG LFLSKLFLVL FRPYVEEVLE LNFRRARRVI FDLNETDEGL ESPSDFVTIL SEFAIASDTM MTDCSIRFMQ
401: IVQDILEQLT HLVVLHFGES VLTRILQLYD KYIDFLIKAL PGHSDEDGLP ELQDNTVLAR AETDSEQLAL LGAAFTILDE LLPRSLVKVW KLQIENGGGE
501: GENSAALNSS AAPELKEWKR HMVQAFDKLR NYFCLQFVLS FIYSREGLTR LDALIYLTET PDDLHLPSLP FQALFSKLQQ LAIIAGDVLL GKEKLQKILL
601: ARLTETVIIW LSNEQEFWSA FEDESNPLQP SGLQQLILDM NFTVEIARFA GYPFKVVQNH ASVVINRAIN IFSERGINPQ SSLPKTEWFT EAAKSAINRL
701: LMGSEDASEP EEYECEEEEE DDHHIVLPEM DDDSDSEDTS SLSTVDSFES FASASMADLE SPSFTDSES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)