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AT1G10070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : branched-chain amino acid transaminase 2
Curator
Summary (TAIR10)
Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.
Computational
Description (TAIR10)
branched-chain amino acid transaminase 2 (BCAT-2); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.1); Has 12153 Blast hits to 12153 proteins in 2497 species: Archae - 154; Bacteria - 7615; Metazoa - 264; Fungi - 416; Plants - 254; Viruses - 0; Other Eukaryotes - 3450 (source: NCBI BLink).
Protein Annotations
EC:2.6.1.42eggNOG:COG0115eggNOG:KOG0975EMBL:AK317528EnsemblPlants:AT1G10070EnsemblPlants:AT1G10070.1EnsemblPlants:AT1G10070.2
entrez:837543ExpressionAtlas:B9DHH5GeneID:837543GO:GO:0009081GO:GO:0052654GO:GO:0052655GO:GO:0052656
Gramene:AT1G10070.1Gramene:AT1G10070.2gramene_pathway:2.6.1.42gramene_pathway:ILEUDEG-PWYgramene_pathway:ILEUSYN-PWYgramene_pathway:LEU-DEG2-PWYgramene_pathway:LEUSYN-PWY
gramene_pathway:PWY-3921gramene_pathway:VALDEG-PWYgramene_pathway:VALSYN-PWYhmmpanther:PTHR11825hmmpanther:PTHR11825:SF42InterPro:IPR001544InterPro:IPR005786
InterPro:IPR018300KEGG:00270+2.6.1.42KEGG:00280+2.6.1.42KEGG:00290+2.6.1.42KEGG:00770+2.6.1.42KEGG:00966+2.6.1.42KEGG:ath:AT1G10070
KO:K00826OMA:TIANYAPPANTHER:PTHR11825PaxDb:B9DHH5Pfam:PF01063Pfam:Q9M439PhylomeDB:B9DHH5
PIRSF:PIRSF006468PRIDE:B9DHH5PROSITE:PS00770ProteinModelPortal:B9DHH5RefSeq:NP_001031015.1RefSeq:NP_172478.1scanprosite:PS00770
SMR:B9DHH5STRING:3702.AT1G10070.1SUPFAM:SSF56752TAIR:AT1G10070tair10-symbols:ATBCAT-2tair10-symbols:BCAT-2TIGRfam:TIGR01123
TIGRFAMs:TIGR01123UniGene:At.18974UniGene:At.48176UniProt:B9DHH5UniProt:Q9M439
Coordinates (TAIR10) chr1:+:3288255..3290164
Molecular Weight (calculated) 42593.30 Da
IEP (calculated) 8.70
GRAVY (calculated) -0.19
Length 388 amino acids
Sequence (TAIR10)
(BLAST)
001: MIKTITSLRK TLVLPLHLHI RTLQTFAKYN AQAASALREE RKKPLYQNGD DVYADLDWDN LGFGLNPADY MYVMKCSKDG EFTQGELSPY GNIQLSPSAG
101: VLNYGQAIYE GTKAYRKENG KLLLFRPDHN AIRMKLGAER MLMPSPSVDQ FVNAVKQTAL ANKRWVPPAG KGTLYIRPLL MGSGPILGLG PAPEYTFIVY
201: ASPVGNYFKE GMAALNLYVE EEYVRAAPGG AGGVKSITNY APVLKALSRA KSRGFSDVLY LDSVKKKYLE EASSCNVFVV KGRTISTPAT NGTILEGITR
301: KSVMEIASDQ GYQVVEKAVH VDEVMDADEV FCTGTAVVVA PVGTITYQEK RVEYKTGDES VCQKLRSVLV GIQTGLIEDN KGWVTDIN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)