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AT1G10030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.477
extracellular 0.456
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homolog of yeast ergosterol28
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
homolog of yeast ergosterol28 (ERG28); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Erg28-like (InterPro:IPR005352); Has 223 Blast hits to 223 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 94; Plants - 48; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioGrid:22778eggNOG:ENOG4111J9XeggNOG:KOG3455EMBL:AC004122EMBL:AK227737EMBL:BT008773EMBL:CP002684
EnsemblPlants:AT1G10030EnsemblPlants:AT1G10030.1entrez:837538GeneID:837538Genevisible:O80594GO:GO:0005789GO:GO:0016021
GO:GO:0016126Gramene:AT1G10030.1hmmpanther:PTHR15451hmmpanther:PTHR15451:SF19HOGENOM:HOG000005677InParanoid:O80594IntAct:O80594
InterPro:IPR005352KEGG:ath:AT1G10030OMA:IYQTMAIPaxDb:O80594Pfam:O80594Pfam:PF03694PhylomeDB:O80594
PIR:T00622PRO:PR:O80594Proteomes:UP000006548RefSeq:NP_563858.1STRING:3702.AT1G10030.1TAIR:AT1G10030tair10-symbols:ERG28
TMHMM:TMhelixUniGene:At.23622UniProt:O80594
Coordinates (TAIR10) chr1:+:3273972..3275631
Molecular Weight (calculated) 14805.20 Da
IEP (calculated) 8.06
GRAVY (calculated) 0.70
Length 129 amino acids
Sequence (TAIR10)
(BLAST)
001: MKALGYWLMV VGSLRLASVW FGFFNIWALR LAVFSQTTMS EVHGRTFGVW TLLTCTLCFL CAFNLENKPL YLATFLSFIY ALGHFLTEYL FYQTMTIANL
101: STVGFFAGTS IVWMLLEWNS LEQPHSKLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)