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AT1G10020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.458
nucleus 0.390
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1005)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1005); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1005) (TAIR:AT4G29310.1); Has 158 Blast hits to 158 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 144; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFGVeggNOG:ENOG410YCGUEMBL:AC004122EMBL:BT011247EMBL:BT012548EMBL:CP002684EnsemblPlants:AT1G10020
EnsemblPlants:AT1G10020.1entrez:837537GeneID:837537Gramene:AT1G10020.1hmmpanther:PTHR31317hmmpanther:PTHR31317:SF3HOGENOM:HOG000238259
InterPro:IPR010410KEGG:ath:AT1G10020OMA:SVQHVNCPfam:PF06219PhylomeDB:O80593PIR:T00621Proteomes:UP000006548
RefSeq:NP_172473.1STRING:3702.AT1G10020.1TAIR:AT1G10020UniGene:At.43424UniGene:At.67719UniProt:O80593
Coordinates (TAIR10) chr1:-:3269939..3271732
Molecular Weight (calculated) 49437.70 Da
IEP (calculated) 9.51
GRAVY (calculated) -0.26
Length 461 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPCPFIRLT IGNLALKVPL AAKTTSSVVH PSSSPCFCKI KLKNFPPQTA AIPYIPLETT QFPEIQTLAA TFHLSSSDIQ RLASRSIFTS KPCLKILIYT
101: GRAGAACGVH SGRLLAKVSV PLDLSGTQSK PCVFHNGWIS VGKGAGKSSS SAQFHLNVKA EPDPRFVFQF DGEPECSPQV VQIQGNIRQP VFTCKFSCRH
201: TGDRTQRSRS LPTETSVSRS WLNSFGSERE RPGKERKGWS ITVHDLSGSP VAMASIVTPF VASPGTDRVS RSNPGSWLIL RPGDCTWRPW GRLEAWRERG
301: GATDGLGYRF ELIPDGSSGA GIVLAESTIS SHRGGKFSIE LGSSPSSSSP TSVVNRSRSR RGGSSGSGGG ASPANSPRGG SGDYGYGLWP WNVYKGFVMS
401: ASVEGEGKCS KPCVEVSVQH VSCMEDAAAY VALSAAIDLS MDACRLFNQR MRKELCHESL S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)