AT1G09930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : oligopeptide transporter 2 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
oligopeptide transporter | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
oligopeptide transporter 2 (OPT2); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: sperm cell, flower, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 4 (TAIR:AT5G64410.1); Has 1309 Blast hits to 1283 proteins in 148 species: Archae - 0; Bacteria - 69; Metazoa - 0; Fungi - 834; Plants - 392; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3227490..3230043 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82338.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.96 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.50 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 734 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAIELHKPE INADDDDDES PVEQVRLTVS NHDDPSLPVW TFRMWFLGLL SCILLSFLNT FFGYRTQPLM ITMISVQVVT LPLGKLMARV LPETKYKIGS 101: WEFSFNPGPF NVKEHVLISM FANAGAGFGS GTAYAVGIVD IIMAFYKRKI SFLASWILVI TTQILGYGWA GIMRKLVVDP AQMWWPTSVL QVSLFRALHE 201: KDNARMSRGK FFVIAFVCSF AWYIFPAYLF LTLSSISWVC WAFPKSITAQ QLGSGMSGLG IGAFALDWSV IASYLGSPLV TPFFAIVNVL VGYVLVMYMV 301: IPISYWGMNV YEANKFPIFS SDLFDKQGQL YNISTIVNNK FELDMENYQQ QGRVYLSTFF AISYGIGFAA IVSTLTHVAL FNGKGIWQQV RASTKAKMDI 401: HTRLMKKYKD IPGWWFYSLL AISLVLSLVL CIFMKDEIQM PWWGLLLASF MALTFTVPVS IITATTNQTP GLNIITEYLM GVLLPGRPIA NVCFKTYGYI 501: SMSQAISFLN DFKLGHYMKI PPRSMFLVQF IGTVIAGTVN ISVAWYLLTS VENICQKELL PPNSPWTCPS DRVFFDASVI WGLVGPKRIF GRLGNYPALN 601: WFFLGGLIGP VLVWLLQKAF PTKTWISQIN LPVLLGATAA MPPATSVNFN CWIIVGVIFN YFVFKYCKKW WQRYNYVLSA ALDAGLAFMG VLLYFSLTMN 701: GISINHWWGA KGENCPLASC PTAPGVLVDG CPVF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)