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AT1G09900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.660
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR-like) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT3G04760.1); Has 67710 Blast hits to 15322 proteins in 310 species: Archae - 4; Bacteria - 73; Metazoa - 1094; Fungi - 1217; Plants - 62670; Viruses - 0; Other Eukaryotes - 2652 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC000132EMBL:CP002684EnsemblPlants:AT1G09900EnsemblPlants:AT1G09900.1entrez:837522
Gene3D:1.25.40.10GeneID:837522Genevisible:Q3EDF8GO:GO:0016020Gramene:AT1G09900.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF358
HOGENOM:HOG000238342InParanoid:Q3EDF8InterPro:IPR002885InterPro:IPR011990iPTMnet:Q3EDF8KEGG:ath:AT1G09900OMA:YGCEPNT
PaxDb:Q3EDF8Pfam:PF12854Pfam:PF13041Pfam:Q3EDF8Pfscan:PS51375PhylomeDB:Q3EDF8PRIDE:Q3EDF8
PRO:PR:Q3EDF8PROSITE:PS51375ProteinModelPortal:Q3EDF8Proteomes:UP000006548RefSeq:NP_172461.1SMR:Q3EDF8STRING:3702.AT1G09900.1
SUPFAM:SSF81901TAIR:AT1G09900TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.51542UniProt:Q3EDF8
Coordinates (TAIR10) chr1:+:3218133..3219929
Molecular Weight (calculated) 66259.60 Da
IEP (calculated) 8.24
GRAVY (calculated) -0.17
Length 598 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLMVSTSSA QEGFCLIQQF HREYKRGNKL DVSCRTSGSI SSKIPLGSRK RNRLVLVSAA SKVESSGLNG RAQKFETLSS GYSNSNGNGH YSSVNSSFAL
101: EDVESNNHLR QMVRTGELEE GFKFLENMVY HGNVPDIIPC TTLIRGFCRL GKTRKAAKIL EILEGSGAVP DVITYNVMIS GYCKAGEINN ALSVLDRMSV
201: SPDVVTYNTI LRSLCDSGKL KQAMEVLDRM LQRDCYPDVI TYTILIEATC RDSGVGHAMK LLDEMRDRGC TPDVVTYNVL VNGICKEGRL DEAIKFLNDM
301: PSSGCQPNVI THNIILRSMC STGRWMDAEK LLADMLRKGF SPSVVTFNIL INFLCRKGLL GRAIDILEKM PQHGCQPNSL SYNPLLHGFC KEKKMDRAIE
401: YLERMVSRGC YPDIVTYNTM LTALCKDGKV EDAVEILNQL SSKGCSPVLI TYNTVIDGLA KAGKTGKAIK LLDEMRAKDL KPDTITYSSL VGGLSREGKV
501: DEAIKFFHEF ERMGIRPNAV TFNSIMLGLC KSRQTDRAID FLVFMINRGC KPNETSYTIL IEGLAYEGMA KEALELLNEL CNKGLMKKSS AEQVAGKM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)