AT1G09900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT3G04760.1); Has 67710 Blast hits to 15322 proteins in 310 species: Archae - 4; Bacteria - 73; Metazoa - 1094; Fungi - 1217; Plants - 62670; Viruses - 0; Other Eukaryotes - 2652 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:3218133..3219929 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66259.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.24 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 598 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLMVSTSSA QEGFCLIQQF HREYKRGNKL DVSCRTSGSI SSKIPLGSRK RNRLVLVSAA SKVESSGLNG RAQKFETLSS GYSNSNGNGH YSSVNSSFAL 101: EDVESNNHLR QMVRTGELEE GFKFLENMVY HGNVPDIIPC TTLIRGFCRL GKTRKAAKIL EILEGSGAVP DVITYNVMIS GYCKAGEINN ALSVLDRMSV 201: SPDVVTYNTI LRSLCDSGKL KQAMEVLDRM LQRDCYPDVI TYTILIEATC RDSGVGHAMK LLDEMRDRGC TPDVVTYNVL VNGICKEGRL DEAIKFLNDM 301: PSSGCQPNVI THNIILRSMC STGRWMDAEK LLADMLRKGF SPSVVTFNIL INFLCRKGLL GRAIDILEKM PQHGCQPNSL SYNPLLHGFC KEKKMDRAIE 401: YLERMVSRGC YPDIVTYNTM LTALCKDGKV EDAVEILNQL SSKGCSPVLI TYNTVIDGLA KAGKTGKAIK LLDEMRAKDL KPDTITYSSL VGGLSREGKV 501: DEAIKFFHEF ERMGIRPNAV TFNSIMLGLC KSRQTDRAID FLVFMINRGC KPNETSYTIL IEGLAYEGMA KEALELLNEL CNKGLMKKSS AEQVAGKM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)